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Database: UniProt
Entry: Q6ATJ8
LinkDB: Q6ATJ8
Original site: Q6ATJ8 
ID   RH16_ORYSJ              Reviewed;         670 AA.
AC   Q6ATJ8; B7EEE3; Q851G0;
DT   03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   13-SEP-2004, sequence version 1.
DT   16-OCT-2019, entry version 104.
DE   RecName: Full=DEAD-box ATP-dependent RNA helicase 16;
DE            EC=3.6.4.13;
GN   OrderedLocusNames=Os03g0728800, LOC_Os03g51900;
GN   ORFNames=OSJNBa0005H20.2, OSJNBb0011H13.1;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16109971; DOI=10.1101/gr.3869505;
RG   The rice chromosome 3 sequencing consortium;
RA   Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R.,
RA   Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L.,
RA   Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S.,
RA   Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S.,
RA   Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J.,
RA   de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H.,
RA   Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F.,
RA   Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A.,
RA   Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J.,
RA   Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L.,
RA   Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A.,
RA   Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W.,
RA   Lee H.R., Jiang J., Jackson S.;
RT   "Sequence, annotation, and analysis of synteny between rice chromosome
RT   3 and diverged grass species.";
RL   Genome Res. 15:1284-1291(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
RA   McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
RA   Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
RA   Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
RA   Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using
RT   next generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD
CC       box family of RNA helicases and controls ATP binding and
CC       hydrolysis.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX56/DBP9
CC       subfamily. {ECO:0000305}.
DR   EMBL; AC120983; AAO38473.1; -; Genomic_DNA.
DR   EMBL; AC135956; AAT77055.1; -; Genomic_DNA.
DR   EMBL; DP000009; ABF98674.1; -; Genomic_DNA.
DR   EMBL; AP008209; BAF13063.1; -; Genomic_DNA.
DR   EMBL; AP014959; BAS86195.1; -; Genomic_DNA.
DR   EMBL; AK068068; BAG90740.1; -; mRNA.
DR   RefSeq; XP_015632665.1; XM_015777179.1.
DR   SMR; Q6ATJ8; -.
DR   STRING; 4530.OS03T0728800-01; -.
DR   PaxDb; Q6ATJ8; -.
DR   EnsemblPlants; Os03t0728800-01; Os03t0728800-01; Os03g0728800.
DR   GeneID; 4333983; -.
DR   Gramene; Os03t0728800-01; Os03t0728800-01; Os03g0728800.
DR   KEGG; osa:4333983; -.
DR   eggNOG; KOG0346; Eukaryota.
DR   eggNOG; ENOG410XR15; LUCA.
DR   HOGENOM; HOG000253015; -.
DR   InParanoid; Q6ATJ8; -.
DR   KO; K14810; -.
DR   OMA; RYRAQDC; -.
DR   OrthoDB; 973872at2759; -.
DR   Proteomes; UP000059680; Chromosome 3.
DR   ExpressionAtlas; Q6ATJ8; baseline and differential.
DR   Genevisible; Q6ATJ8; OS.
DR   GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 2.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Complete proteome; Helicase; Hydrolase;
KW   Nucleotide-binding; Reference proteome; RNA-binding.
FT   CHAIN         1    670       DEAD-box ATP-dependent RNA helicase 16.
FT                                /FTId=PRO_0000282509.
FT   DOMAIN      123    306       Helicase ATP-binding.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00541}.
FT   DOMAIN      340    523       Helicase C-terminal.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00542}.
FT   NP_BIND     136    143       ATP. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00541}.
FT   MOTIF        92    120       Q motif.
FT   MOTIF       254    257       DEAD box.
FT   COMPBIAS     21    101       Glu-rich.
SQ   SEQUENCE   670 AA;  74332 MW;  290641DC05AB928E CRC64;
     MAAAAAASSM AKRKQRKAAT EQEVENHDEA TVAAEAGPEN DGHTAHAAEE AAAAEEGVER
     EGGGEGGAEG EEGPDAAARG GEEGKEEEER EVSFDELGLD EQLKRALRKK GLDKATPIQR
     EAIPLILEGK DVVAKAKTGS GKTFAYLLPM LHELLKLSAE GRIRKSAPNV FILVPTRELC
     QQVHNEASSL LEFCTSKLKV VQVNASMSDK DIKVALSGPP NILVTTPACV ASCISKGIIR
     GSSIKESLSM MILDEADLLL SYRCEDDIKA LVPHIPRSCQ SILMSATSSA DIEKLTKLLL
     HNPFILTLTE VGHAKDDLIP KNVQQFWISC DAKDKMLYIL VLLKLELIQK KVLIFVNSID
     SAFKLRLFLE KFGIRSSVLN AELPQNSRLH IIQAFNARLF DYLIATDDNK SKEERQANKG
     NKKDSRVSRK QLQQTLDAEF GVVRGIDFKN VFTVVNYDMP PDPAGYVHRV GRTGRANKTG
     ASISLVSPKE NGIFEDIENM LKDVENRDTS CISPFPLLTK NAVESLRYRA QDVARSVTTR
     DIKEARRQDI KNEILNSEKL KAHFDENPRD LDLLKHDKLL SNKEIPAHLR DVPEYLIDPT
     TKEASNVVKL SRAAMDIDKP RRRKRMGFKG GSGRSSDPLK TFSAEGKSRR RGRKERDGEQ
     DRRKRKKVES
//
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