ID Q6NKQ5_ARATH Unreviewed; 259 AA.
AC Q6NKQ5;
DT 05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2004, sequence version 1.
DT 27-MAR-2024, entry version 155.
DE SubName: Full=At2g01275 {ECO:0000313|EMBL:AAT06458.1};
DE SubName: Full=RING/FYVE/PHD zinc finger superfamily protein {ECO:0000313|EMBL:AEC05426.1};
GN OrderedLocusNames=At2g01275 {ECO:0000313|EMBL:AEC05426.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AAT06458.1};
RN [1] {ECO:0000313|EMBL:AEC05426.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S., Shea T.P., Benito M.I., Town C.D.,
RA Fujii C.Y., Mason T., Bowman C.L., Barnstead M., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2] {ECO:0000313|EMBL:AAT06458.1}
RP NUCLEOTIDE SEQUENCE.
RA Shinn P., Chen H., Cheuk R., Kim C.J., Carninci P., Hayashizaki Y.,
RA Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., Seki M.,
RA Shinozaki K., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AEC05426.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AEC05426.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; BT012639; AAT06458.1; -; mRNA.
DR EMBL; CP002685; AEC05426.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC05427.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM61907.1; -; Genomic_DNA.
DR RefSeq; NP_001030936.1; NM_001035859.3.
DR RefSeq; NP_001324096.1; NM_001335050.1.
DR RefSeq; NP_671763.1; NM_147230.4.
DR AlphaFoldDB; Q6NKQ5; -.
DR SMR; Q6NKQ5; -.
DR EnsemblPlants; AT2G01275.1; AT2G01275.1; AT2G01275.
DR EnsemblPlants; AT2G01275.2; AT2G01275.2; AT2G01275.
DR EnsemblPlants; AT2G01275.4; AT2G01275.4; AT2G01275.
DR GeneID; 814655; -.
DR Gramene; AT2G01275.1; AT2G01275.1; AT2G01275.
DR Gramene; AT2G01275.2; AT2G01275.2; AT2G01275.
DR Gramene; AT2G01275.4; AT2G01275.4; AT2G01275.
DR KEGG; ath:AT2G01275; -.
DR TAIR; AT2G01275; -.
DR HOGENOM; CLU_061276_0_0_1; -.
DR OMA; SRNRSMQ; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q6NKQ5; baseline and differential.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd16495; RING_CH-C4HC3_MARCH; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR022143; DUF3675.
DR InterPro; IPR033275; MARCH-like.
DR InterPro; IPR011016; Znf_RING-CH.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR23012; RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING; 1.
DR PANTHER; PTHR23012:SF93; RING_FYVE_PHD ZINC FINGER SUPERFAMILY PROTEIN; 1.
DR Pfam; PF12428; DUF3675; 1.
DR Pfam; PF12906; RINGv; 1.
DR SMART; SM00744; RINGv; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51292; ZF_RING_CH; 1.
PE 2: Evidence at transcript level;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 165..184
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 196..216
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 51..111
FT /note="RING-CH-type"
FT /evidence="ECO:0000259|PROSITE:PS51292"
SQ SEQUENCE 259 AA; 29411 MW; FB9BDBE4B0C60BCD CRC64;
MGDHFVLLVD RLITESTIEA AIQSRNQMLQ ANIPVEECTI LDDKTLEMLR NGDLSMAECR
ICHDEDLDSN METPCSCSGS VKYAHRRCVQ RWCNEKGDTT CEICHQEFKP DYTAPPPLLE
LGHVPLHFRG NWGISQREHR FITVVPADST FIDQPYPLSS TTSFICCRSL VLIFMALLIL
RHTLPLVLTG SNLHVFPLFT LLFLRILGIM LPIYVVTKAV ATCRRHSRTL DTSPSDDSSD
EETDSWRLPQ TQSYIIGVR
//
