ID Q6NL06_ARATH Unreviewed; 466 AA.
AC Q6NL06;
DT 05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2004, sequence version 1.
DT 27-MAR-2024, entry version 153.
DE SubName: Full=At1g47570 {ECO:0000313|EMBL:AAS99681.1};
DE SubName: Full=RING/U-box superfamily protein {ECO:0000313|EMBL:AEE32187.1};
GN OrderedLocusNames=At1g47570 {ECO:0000313|EMBL:AEE32187.1};
GN ORFNames=F16N3.15 {ECO:0000313|EMBL:AEE32187.1}, F16N3_15
GN {ECO:0000313|EMBL:AEE32187.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AAS99681.1};
RN [1] {ECO:0000313|EMBL:AEE32187.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2] {ECO:0000313|EMBL:AAR92268.1}
RP NUCLEOTIDE SEQUENCE.
RA Cheuk R., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AAS99681.1}
RP NUCLEOTIDE SEQUENCE.
RA Kim C.J., Chen H., Cheuk R., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AEE32187.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:AEE32187.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; BT011232; AAR92268.1; -; mRNA.
DR EMBL; BT012537; AAS99681.1; -; mRNA.
DR EMBL; CP002684; AEE32187.1; -; Genomic_DNA.
DR RefSeq; NP_175188.3; NM_103650.5.
DR AlphaFoldDB; Q6NL06; -.
DR SMR; Q6NL06; -.
DR STRING; 3702.Q6NL06; -.
DR PaxDb; 3702-AT1G47570-1; -.
DR ProteomicsDB; 177615; -.
DR EnsemblPlants; AT1G47570.1; AT1G47570.1; AT1G47570.
DR GeneID; 841166; -.
DR Gramene; AT1G47570.1; AT1G47570.1; AT1G47570.
DR TAIR; AT1G47570; -.
DR eggNOG; ENOG502QQ34; Eukaryota.
DR HOGENOM; CLU_046608_0_0_1; -.
DR OMA; NPICDQE; -.
DR OrthoDB; 450556at2759; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q6NL06; baseline and differential.
DR GO; GO:0046872; F:metal ion binding; IEA:InterPro.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR CDD; cd16503; RING-HC_CHFR; 1.
DR Gene3D; 3.30.40.140; -; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR040909; CHFR_Znf-CRD.
DR InterPro; IPR018957; Znf_C3HC4_RING-type.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR16079:SF4; E3 UBIQUITIN-PROTEIN LIGASE CHFR; 1.
DR PANTHER; PTHR16079; UBIQUITIN LIGASE PROTEIN CHFR; 1.
DR Pfam; PF00097; zf-C3HC4; 1.
DR Pfam; PF17979; zf-CRD; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 1: Evidence at protein level;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q6NL06,
KW ECO:0007829|ProteomicsDB:Q6NL06};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT DOMAIN 138..183
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
SQ SEQUENCE 466 AA; 53103 MW; 5D88A1A8199C37DB CRC64;
MTTTAETGQS SGSKPSDDDA WAKLVPLDTR FSDIEIRCND MVICSEIKPS SLEKHEWCRI
TKNLGQSSAT IHNKSSDAIL VDKAVVPKDG AVDIISGSEI VPGPEEQGYL QYRFTIMPAP
ESRTQLLQIS IDPEHAKCSI CLNIWHDVVT AAPCLHNFCN GCFSEWMRRS EEKHKHVLCP
QCRTTVQYVG KNHFLKNIQE EILKVDAALR RPAEDIAVLD SSASIQSNLI IGSKRKRRLN
MPAPTHEERD SLRLQCPQCV ANIGGYRCEH HGAHLQCHLC QGMMPFRANL QVPLHCKGCD
RPFCGAYWSS ENVTQGVSGP VCVRETFRPI SERTITRIPF ITHEMNRHEQ DITQRCIAHM
EKTVPDVVAE WLRLFNNREI DRSRMPLNHA ETITASTHVC NDCYDKLVGF LLYWFRITLP
RNHLPADVAA REDCWYGYAC RTQHHNEDHA RKRNHVCRPT RGNHHF
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