ID Q6NLS0_ARATH Unreviewed; 312 AA.
AC Q6NLS0;
DT 05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2004, sequence version 1.
DT 27-MAR-2024, entry version 128.
DE SubName: Full=At2g29070 {ECO:0000313|EMBL:AAS76747.1};
DE SubName: Full=Ubiquitin fusion degradation UFD1 family protein {ECO:0000313|EMBL:AEC08206.1};
GN OrderedLocusNames=At2g29070 {ECO:0000313|EMBL:AEC08206.1};
GN ORFNames=T9I4.15 {ECO:0000313|EMBL:AEC08206.1}, T9I4_15
GN {ECO:0000313|EMBL:AEC08206.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AAS76747.1};
RN [1] {ECO:0000313|EMBL:AEC08206.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S., Shea T.P., Benito M.I., Town C.D.,
RA Fujii C.Y., Mason T., Bowman C.L., Barnstead M., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2] {ECO:0000313|EMBL:AAS76747.1}
RP NUCLEOTIDE SEQUENCE.
RA Cheuk R., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AEC08206.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AEC08206.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; BT011682; AAS49045.1; -; mRNA.
DR EMBL; BT012260; AAS76747.1; -; mRNA.
DR EMBL; CP002685; AEC08206.1; -; Genomic_DNA.
DR RefSeq; NP_973557.1; NM_201828.4.
DR AlphaFoldDB; Q6NLS0; -.
DR SMR; Q6NLS0; -.
DR STRING; 3702.Q6NLS0; -.
DR TCDB; 3.A.16.1.5; the endoplasmic reticular retrotranslocon (er-rt) family.
DR PaxDb; 3702-AT2G29070-2; -.
DR ProteomicsDB; 175350; -.
DR EnsemblPlants; AT2G29070.2; AT2G29070.2; AT2G29070.
DR GeneID; 817455; -.
DR Gramene; AT2G29070.2; AT2G29070.2; AT2G29070.
DR TAIR; AT2G29070; -.
DR eggNOG; KOG1816; Eukaryota.
DR HOGENOM; CLU_037790_2_0_1; -.
DR OMA; MAHENYR; -.
DR OrthoDB; 1125766at2759; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q6NLS0; baseline and differential.
DR GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
DR Gene3D; 3.10.330.10; -; 1.
DR Gene3D; 2.40.40.50; Ubiquitin fusion degradation protein UFD1, N-terminal domain; 1.
DR InterPro; IPR004854; Ufd1-like.
DR InterPro; IPR042299; Ufd1-like_Nn.
DR PANTHER; PTHR12555:SF21; UBIQUITIN FUSION DEGRADATION PROTEIN 1 HOMOLOG; 1.
DR PANTHER; PTHR12555; UBIQUITIN FUSION DEGRADATON PROTEIN 1; 1.
DR Pfam; PF03152; UFD1; 1.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q6NLS0,
KW ECO:0007829|ProteomicsDB:Q6NLS0};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548}.
FT REGION 179..294
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 179..210
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 228..255
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 256..275
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 276..294
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 312 AA; 34903 MW; A4197813955654D4 CRC64;
MDGDGSSFEQ CYRCYPVTFI DKAHLEKGDK IIMPPSALDR LASLHIEYPM LFQLSNVSVE
KTSHCGVLEF TADEGLVYLP YWMMQNMSLE EGDVMQVKNI SLVKGTYIKL QPHTQDFLDI
SNPKAILETT LRSYSCLTTG DTIMVPYNNK QYYINVVEAK PSSAVSIIET DCEVDFAPPL
DYKEPEKPQK LTPSNKRPLQ VKEEEEPASK VPKFTPFTGS GKRLDGKAQT QTEPEDTKQQ
EKPTENGKDD EKLSVTTPRQ ISGKLVFGSN SKSAAKETAK VDDPKNIVQE SSTKSDEAKF
KVFTGKKYSL NG
//
