ID Q727M8_DESVH Unreviewed; 473 AA.
AC Q727M8;
DT 05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2004, sequence version 1.
DT 27-MAR-2024, entry version 142.
DE SubName: Full=Sigma-54 dependent transcriptional regulator {ECO:0000313|EMBL:AAS97299.1};
GN OrderedLocusNames=DVU_2827 {ECO:0000313|EMBL:AAS97299.1};
OS Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM
OS B-1760 / Hildenborough).
OC Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales;
OC Desulfovibrionaceae; Nitratidesulfovibrio.
OX NCBI_TaxID=882 {ECO:0000313|EMBL:AAS97299.1, ECO:0000313|Proteomes:UP000002194};
RN [1] {ECO:0000313|EMBL:AAS97299.1, ECO:0000313|Proteomes:UP000002194}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough
RC {ECO:0000313|Proteomes:UP000002194};
RX PubMed=15077118; DOI=10.1038/nbt959;
RA Heidelberg J.F., Seshadri R., Haveman S.A., Hemme C.L., Paulsen I.T.,
RA Kolonay J.F., Eisen J.A., Ward N., Methe B., Brinkac L.M., Daugherty S.C.,
RA Deboy R.T., Dodson R.J., Durkin A.S., Madupu R., Nelson W.C.,
RA Sullivan S.A., Fouts D., Haft D.H., Selengut J., Peterson J.D.,
RA Davidsen T.M., Zafar N., Zhou L., Radune D., Dimitrov G., Hance M.,
RA Tran K., Khouri H., Gill J., Utterback T.R., Feldblyum T.V., Wall J.D.,
RA Voordouw G., Fraser C.M.;
RT "The genome sequence of the anaerobic, sulfate-reducing bacterium
RT Desulfovibrio vulgaris Hildenborough.";
RL Nat. Biotechnol. 22:554-559(2004).
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DR EMBL; AE017285; AAS97299.1; -; Genomic_DNA.
DR RefSeq; WP_010940093.1; NZ_CABHLV010000001.1.
DR RefSeq; YP_012039.1; NC_002937.3.
DR AlphaFoldDB; Q727M8; -.
DR SMR; Q727M8; -.
DR STRING; 882.DVU_2827; -.
DR PaxDb; 882-DVU_2827; -.
DR EnsemblBacteria; AAS97299; AAS97299; DVU_2827.
DR KEGG; dvu:DVU_2827; -.
DR PATRIC; fig|882.5.peg.2554; -.
DR eggNOG; COG3829; Bacteria.
DR HOGENOM; CLU_000445_8_1_7; -.
DR OrthoDB; 9763792at2; -.
DR PhylomeDB; Q727M8; -.
DR Proteomes; UP000002194; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR030828; HTH_TypR.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF18024; HTH_50; 1.
DR Pfam; PF13426; PAS_9; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000002194};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 4..67
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 148..377
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 473 AA; 53563 MW; 23C277195D650F42 CRC64;
MKKIIEHIES IFDILSDGIY ITQRDGTTLL VNRMYEQLTG LSFKDLRGRN VHDLVADGIF
DTILNPEVVR TKRPAVSVQH VRQSKKIILR GYPVFDEHGE VCLVVTFARD ITMITQFREQ
IAQQKQLIET FNDRIECMLH EQVRNSQPVF ESEVMQQVLD LLQRVAATDA NILILGETGV
GKDVFARLAH EYSPRSSKMF LKVDCGSIAE NLIESELFGY VPGAFSGASS KGKAGYFEIA
DGGTVFLDEI GELPLPMQAK LLRVLQDREV MRVGSSQARK VDVRIIAATN RDLAEDAKAG
KFRSDLYYRL NVAVLDLPPL RERQQDIIPL VERFLDRFNA KYRRNMTLPK GTRQALQNYK
WPGNVREMQN LIQSLVVTCE GHSIKPEHLP PHIQKAARNR TAYTPPAPDD ARPLKEIMAD
IEREILEEAV RTHGSVCKVA RMYKISRTTL FRKLRGSSLA GVSGDEEQEN TGQ
//