ID Q7X9H5_ARATH Unreviewed; 334 AA.
AC Q7X9H5;
DT 01-OCT-2003, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2003, sequence version 1.
DT 27-MAR-2024, entry version 159.
DE SubName: Full=MADS-box protein {ECO:0000313|EMBL:AAN52803.1, ECO:0000313|EMBL:ABE66235.1};
DE SubName: Full=MADS-box transcription factor family protein {ECO:0000313|EMBL:AED95809.1};
GN Name=AGL84 {ECO:0000313|TAIR:AT5G49420};
GN OrderedLocusNames=At5g49420 {ECO:0000313|Araport:AT5G49420,
GN ECO:0000313|EMBL:AED95809.1};
GN ORFNames=K7J8.9 {ECO:0000313|EMBL:AED95809.1}, K7J8_9
GN {ECO:0000313|EMBL:AED95809.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AAN52803.1};
RN [1] {ECO:0000313|EMBL:AED95809.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130714; DOI=10.1038/35048507;
RG Kazusa DNA Research Institute;
RG Cold Spring Harbor and Washington University in St Louis Sequencing Consortium;
RG European Union Arabidopsis Genome Sequencing Consortium;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., See L.H., Vil D., Baker J.,
RA Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Dusterhoft A., Stiekema W., Pohl T., Entian K.D.,
RA Terryn N., Hartley N., Bent E., Johnson S., Langham S.A., McCullagh B.,
RA Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H.,
RA Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Lankhorst R.K., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S.,
RA Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J.,
RA Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K., Rudd S., Schoof H.,
RA Schueller C., Zaccaria P., Mewes H.W., Bevan M., Fransz P.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2] {ECO:0000313|EMBL:AAN52803.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Inflorescence {ECO:0000313|EMBL:AAN52803.1};
RX PubMed=12837945; DOI=10.1105/tpc.011544;
RA Parenicova L., de Folter S., Kieffer M., Horner D.S., Favalli C.,
RA Busscher J., Cook H.E., Ingram R.M., Kater M.M., Davies B., Angenent G.C.,
RA Colombo L.;
RT "Molecular and phylogenetic analyses of the complete MADS-box transcription
RT factor family in Arabidopsis: new openings to the MADS world.";
RL Plant Cell 15:1538-1551(2003).
RN [3] {ECO:0000313|EMBL:ABE66235.1}
RP NUCLEOTIDE SEQUENCE.
RA Underwood B.A., Xiao Y., Moskal W., Monaghan E., Wang W., Redman J.,
RA Wu H.C., Utterback T., Town C.D.;
RL Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AED95809.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:AED95809.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- INTERACTION:
CC Q7X9H5; Q9SUT6: AGL52; NbExp=5; IntAct=EBI-622432, EBI-622194;
CC Q7X9H5; Q7XJL1: AGL89; NbExp=5; IntAct=EBI-622432, EBI-622374;
CC Q7X9H5; B3H5S0: At5g27944; NbExp=3; IntAct=EBI-622432, EBI-15205114;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; AY141239; AAN52803.1; -; mRNA.
DR EMBL; DQ447056; ABE66235.1; -; mRNA.
DR EMBL; CP002688; AED95809.1; -; Genomic_DNA.
DR RefSeq; NP_199753.3; NM_124319.4.
DR AlphaFoldDB; Q7X9H5; -.
DR SMR; Q7X9H5; -.
DR IntAct; Q7X9H5; 47.
DR STRING; 3702.Q7X9H5; -.
DR PaxDb; 3702-AT5G49420-1; -.
DR EnsemblPlants; AT5G49420.1; AT5G49420.1; AT5G49420.
DR GeneID; 835002; -.
DR Gramene; AT5G49420.1; AT5G49420.1; AT5G49420.
DR KEGG; ath:AT5G49420; -.
DR Araport; AT5G49420; -.
DR TAIR; AT5G49420; AGL84.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_074925_0_0_1; -.
DR OMA; KSNEIMA; -.
DR OrthoDB; 670489at2759; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q7X9H5; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000987; F:cis-regulatory region sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR CDD; cd00266; MADS_SRF_like; 1.
DR Gene3D; 3.40.1810.10; Transcription factor, MADS-box; 1.
DR InterPro; IPR033897; MADS_SRF-like.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR PANTHER; PTHR11945:SF702; AGAMOUS-LIKE 83-RELATED; 1.
DR PANTHER; PTHR11945; MADS BOX PROTEIN; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SRF-like; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 1: Evidence at protein level;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 6..51
FT /note="MADS-box"
FT /evidence="ECO:0000259|PROSITE:PS50066"
SQ SEQUENCE 334 AA; 37396 MW; 0267B2B443E64C87 CRC64;
MVKKGGTKRK IAIETIQKRD SLRVTCTKRR EGLYSKASQL CLLSDAQIAI LATPPSSESN
VSFYSFGHSS VDAVVSAFLS GQRPVPKDNK ETREDVGICL TRNNLGLGFW WNDESLARSE
NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL
ILQSASPICC IPENLNEITQ EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC
ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL
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