ID Q7XYR8_MAIZE Unreviewed; 360 AA.
AC Q7XYR8;
DT 01-OCT-2003, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2003, sequence version 1.
DT 27-MAR-2024, entry version 148.
DE SubName: Full=HB transcription factor {ECO:0000313|EMBL:AIB05822.1};
DE SubName: Full=Homeobox protein knotted-1-like 4 {ECO:0000313|EMBL:ONM27724.1};
DE SubName: Full=Homeobox protein rough sheath 1 {ECO:0000313|EMBL:ACG36242.1};
DE SubName: Full=Homeobox transcription factor GNARLY1 {ECO:0000313|EMBL:AAP76320.1};
GN Name=gn1 {ECO:0000313|EMBL:AAP76320.1};
GN Synonyms=100283277 {ECO:0000313|EnsemblPlants:Zm00001eb117820_P001},
GN HB61 {ECO:0000313|EMBL:AIB05822.1};
GN ORFNames=ZEAMMB73_Zm00001d007842 {ECO:0000313|EMBL:ONM27724.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AAP76320.1};
RN [1] {ECO:0000313|EMBL:AAP76320.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=12952874; DOI=10.1101/gr.1280703;
RA Inada D.C., Bashir A., Lee C., Thomas B.C., Ko C., Goff S.A., Freeling M.;
RT "Conserved noncoding sequences in the grasses.";
RL Genome Res. 13:2030-2041(2003).
RN [2] {ECO:0000313|EMBL:ACG36242.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=18937034; DOI=10.1007/s11103-008-9415-4;
RA Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., Tatarinova T.V.,
RA Zhang H., Swaller T.J., Lu Y.P., Bouck J., Flavell R.B., Feldmann K.A.;
RT "Insights into corn genes derived from large-scale cDNA sequencing.";
RL Plant Mol. Biol. 69:179-194(2009).
RN [3] {ECO:0000313|EMBL:AIB05822.1}
RP NUCLEOTIDE SEQUENCE.
RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T.,
RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M.,
RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., Doseff A.I.,
RA Grotewold E.;
RT "The Maize TFome - Development of a transcription factor open reading frame
RT collection for functional genomics.";
RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:ONM27724.1, ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb117820_P001,
RC ECO:0000313|Proteomes:UP000007305};
RC TISSUE=Seedling {ECO:0000313|EMBL:ONM27724.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EnsemblPlants:Zm00001eb117820_P001}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb117820_P001};
RG EnsemblPlants;
RL Submitted (MAY-2021) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108}.
CC -!- SIMILARITY: Belongs to the TALE/KNOX homeobox family.
CC {ECO:0000256|PROSITE-ProRule:PRU00559}.
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DR EMBL; AY312168; AAP76320.1; -; Genomic_DNA.
DR EMBL; EU964124; ACG36242.1; -; mRNA.
DR EMBL; KJ728331; AIB05822.1; -; mRNA.
DR EMBL; CM007648; ONM27724.1; -; Genomic_DNA.
DR RefSeq; NP_001149651.1; NM_001156179.1.
DR AlphaFoldDB; Q7XYR8; -.
DR SMR; Q7XYR8; -.
DR IntAct; Q7XYR8; 1.
DR STRING; 4577.Q7XYR8; -.
DR EnsemblPlants; Zm00001eb117820_T001; Zm00001eb117820_P001; Zm00001eb117820.
DR GeneID; 100283277; -.
DR Gramene; Zm00001eb117820_T001; Zm00001eb117820_P001; Zm00001eb117820.
DR KEGG; zma:100283277; -.
DR HOGENOM; CLU_040111_0_0_1; -.
DR InParanoid; Q7XYR8; -.
DR OMA; TQEANNN; -.
DR OrthoDB; 3180467at2759; -.
DR Proteomes; UP000007305; Chromosome 2.
DR ExpressionAtlas; Q7XYR8; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR005539; ELK_dom.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR008422; Homeobox_KN_domain.
DR InterPro; IPR005540; KNOX1.
DR InterPro; IPR005541; KNOX2.
DR PANTHER; PTHR11850:SF102; HOMEOBOX PROTEIN HOMOTHORAX; 1.
DR PANTHER; PTHR11850; HOMEOBOX PROTEIN TRANSCRIPTION FACTORS; 1.
DR Pfam; PF03789; ELK; 1.
DR Pfam; PF05920; Homeobox_KN; 1.
DR Pfam; PF03790; KNOX1; 1.
DR Pfam; PF03791; KNOX2; 1.
DR SMART; SM01188; ELK; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM01255; KNOX1; 1.
DR SMART; SM01256; KNOX2; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS51213; ELK; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 1: Evidence at protein level;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU00108};
KW Homeobox {ECO:0000256|ARBA:ARBA00023155, ECO:0000256|PROSITE-
KW ProRule:PRU00108};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00108};
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q7XYR8};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305}.
FT DOMAIN 238..258
FT /note="ELK"
FT /evidence="ECO:0000259|PROSITE:PS51213"
FT DOMAIN 258..321
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DNA_BIND 259..322
FT /note="Homeobox; TALE-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT REGION 63..84
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 189..235
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 63..80
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 209..235
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 360 AA; 39215 MW; FC93A972CC6CCEEA CRC64;
MDQNFGNLGT GAGSSGGCGG SNSNSKAVAA VSSSSFLQLP LSTAAAASPA YYGAPLALLH
HGTTAGPSSS QQQQHQSPYA KHGAEMSAAE ADAIKAKIVA HPQYSALLAA YLDCQKVGAP
PDLLERLTAM AAKLDARPPG RHGPRDPELD QFMEAYCNML VKYREELTRP IDEAMEFLKR
VEAQLDSIAG GGSSSSARLS LADGKSSEGA GSSEDDDMDP SGRENEPPEI DPRAEDKELK
YQLLKKYSGY LSSLRQEFSK KKKKGKLPKE ARQKLLHWWE LHYKWPYPSE TEKIALAEAT
GLDQKQINNW FINQRKRHWK PSEDMPFVMM EGFHPQTAAA LYLDGGAFMA DGMTTYRLGS
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