GenomeNet

Database: UniProt
Entry: Q7ZUK9_DANRE
LinkDB: Q7ZUK9_DANRE
Original site: Q7ZUK9_DANRE 
ID   Q7ZUK9_DANRE            Unreviewed;       335 AA.
AC   Q7ZUK9; A0A2R8RQR5; Q6NV17;
DT   01-JUN-2003, integrated into UniProtKB/TrEMBL.
DT   01-JUN-2003, sequence version 1.
DT   24-JAN-2024, entry version 127.
DE   SubName: Full=Regulation of nuclear pre-mRNA domain-containing 1B {ECO:0000313|EMBL:AAH68349.1, ECO:0000313|Ensembl:ENSDARP00000055563};
DE   SubName: Full=Regulation of nuclear pre-mRNA domain-containing protein 1B {ECO:0000313|RefSeq:NP_955850.1};
GN   Name=fb23h08 {ECO:0000313|RefSeq:NP_955850.1};
GN   Synonyms=wu:fb23h08 {ECO:0000313|RefSeq:NP_955850.1}, zgc:55687
GN   {ECO:0000313|RefSeq:NP_955850.1};
GN   OrderedLocusNames=rprd1b {ECO:0000313|EMBL:AAH68349.1,
GN   ECO:0000313|Ensembl:ENSDARP00000055563,
GN   ECO:0000313|RefSeq:NP_955850.1, ECO:0000313|ZFIN:ZDB-GENE-030131-355};
OS   Danio rerio (Zebrafish) (Brachydanio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Danionidae; Danioninae; Danio.
OX   NCBI_TaxID=7955 {ECO:0000313|EMBL:AAH68349.1};
RN   [1] {ECO:0000313|RefSeq:NP_955850.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=AB {ECO:0000313|RefSeq:NP_955850.1};
RX   PubMed=15256591; DOI=10.1073/pnas.0403929101;
RA   Amsterdam A., Nissen R.M., Sun Z., Swindell E.C., Farrington S.,
RA   Hopkins N.;
RT   "Identification of 315 genes essential for early zebrafish development.";
RL   Proc. Natl. Acad. Sci. U.S.A. 101:12792-12797(2004).
RN   [2] {ECO:0000313|EMBL:AAH68349.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=AB {ECO:0000313|EMBL:AAH48885.1};
RC   TISSUE=Kidney {ECO:0000313|EMBL:AAH68349.1}, and Whole body
RC   {ECO:0000313|EMBL:AAH48885.1};
RG   NIH - Zebrafish Gene Collection (ZGC) project;
RL   Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|Ensembl:ENSDARP00000055563}
RP   IDENTIFICATION.
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000055563};
RG   Ensembl;
RL   Submitted (FEB-2012) to UniProtKB.
RN   [4] {ECO:0000313|Ensembl:ENSDARP00000055563, ECO:0000313|Proteomes:UP000000437}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000055563};
RX   PubMed=23594743; DOI=10.1038/nature12111;
RG   Genome Reference Consortium Zebrafish;
RA   Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA   Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA   Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA   White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA   Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA   Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA   Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA   Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA   Clee C., Oliver K., Clark R., Riddle C., Elliot D., Eliott D.,
RA   Threadgold G., Harden G., Ware D., Begum S., Mortimore B., Mortimer B.,
RA   Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M.,
RA   Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M.,
RA   Glithero R., Howden P., Barker N., Lloyd C., Stevens C., Harley J.,
RA   Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D.,
RA   Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K.,
RA   Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R.,
RA   Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M.,
RA   Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA   Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M.,
RA   Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M.,
RA   Woodmansey R., Clark G., Cooper J., Cooper J., Tromans A., Grafham D.,
RA   Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J.,
RA   Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I.,
RA   Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M.,
RA   Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M.,
RA   Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G., Osoegawa K., Zhu B.,
RA   Rapp A., Widaa S., Langford C., Yang F., Schuster S.C., Carter N.P.,
RA   Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R.,
RA   Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I.,
RA   Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H.,
RA   Rogers J., Stemple D.L.;
RT   "The zebrafish reference genome sequence and its relationship to the human
RT   genome.";
RL   Nature 496:498-503(2013).
RN   [5] {ECO:0000313|RefSeq:NP_955850.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=AB {ECO:0000313|RefSeq:NP_955850.1};
RX   PubMed=26469318;
RA   Elkon R., Milon B., Morrison L., Shah M., Vijayakumar S., Racherla M.,
RA   Leitch C.C., Silipino L., Hadi S., Weiss-Gayet M., Barras E., Schmid C.D.,
RA   Ait-Lounis A., Barnes A., Song Y., Eisenman D.J., Eliyahu E.,
RA   Frolenkov G.I., Strome S.E., Durand B., Zaghloul N.A., Jones S.M.,
RA   Reith W., Hertzano R.;
RT   "RFX transcription factors are essential for hearing in mice.";
RL   Nat. Commun. 6:8549-8549(2015).
RN   [6] {ECO:0000313|Ensembl:ENSDARP00000150790}
RP   IDENTIFICATION.
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000150790};
RG   Ensembl;
RL   Submitted (APR-2018) to UniProtKB.
RN   [7] {ECO:0000313|RefSeq:NP_955850.1}
RP   IDENTIFICATION.
RC   STRAIN=AB {ECO:0000313|RefSeq:NP_955850.1};
RG   RefSeq;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the UPF0400 (RTT103) family.
CC       {ECO:0000256|ARBA:ARBA00034310}.
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DR   EMBL; BX322612; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; BC048885; AAH48885.1; -; mRNA.
DR   EMBL; BC068349; AAH68349.1; -; mRNA.
DR   RefSeq; NP_955850.1; NM_199556.1.
DR   STRING; 7955.ENSDARP00000055563; -.
DR   PaxDb; 7955-ENSDARP00000055563; -.
DR   Ensembl; ENSDART00000055564.6; ENSDARP00000055563.4; ENSDARG00000038113.6.
DR   Ensembl; ENSDART00000185797.1; ENSDARP00000150790.1; ENSDARG00000038113.6.
DR   GeneID; 321636; -.
DR   KEGG; dre:321636; -.
DR   CTD; 58490; -.
DR   ZFIN; ZDB-GENE-030131-355; rprd1b.
DR   eggNOG; KOG2669; Eukaryota.
DR   HOGENOM; CLU_055523_1_0_1; -.
DR   OMA; KTWQREL; -.
DR   OrthoDB; 1989419at2759; -.
DR   TreeFam; TF320926; -.
DR   Reactome; R-DRE-6807505; RNA polymerase II transcribes snRNA genes.
DR   Proteomes; UP000000437; Chromosome 23.
DR   Bgee; ENSDARG00000038113; Expressed in gastrula and 28 other cell types or tissues.
DR   GO; GO:0099122; F:RNA polymerase II C-terminal domain binding; IEA:InterPro.
DR   GO; GO:0000993; F:RNA polymerase II complex binding; IBA:GO_Central.
DR   GO; GO:0031124; P:mRNA 3'-end processing; IBA:GO_Central.
DR   CDD; cd17012; CID_RPRD1B; 1.
DR   Gene3D; 1.25.40.90; -; 1.
DR   Gene3D; 6.10.250.2560; -; 1.
DR   InterPro; IPR006569; CID_dom.
DR   InterPro; IPR008942; ENTH_VHS.
DR   InterPro; IPR032337; RPRD1A/B_C.
DR   InterPro; IPR047882; RPRD1B_CID.
DR   PANTHER; PTHR12460; CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN; 1.
DR   PANTHER; PTHR12460:SF3; REGULATION OF NUCLEAR PRE-MRNA DOMAIN-CONTAINING PROTEIN 1B; 1.
DR   Pfam; PF04818; CID; 1.
DR   Pfam; PF16566; CREPT; 1.
DR   SMART; SM00582; RPR; 1.
DR   SUPFAM; SSF48464; ENTH/VHS domain; 1.
DR   PROSITE; PS51391; CID; 1.
PE   1: Evidence at protein level;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Proteomics identification {ECO:0007829|PeptideAtlas:Q7ZUK9};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT   DOMAIN          1..133
FT                   /note="CID"
FT                   /evidence="ECO:0000259|PROSITE:PS51391"
FT   REGION          132..181
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          271..305
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        132..159
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   335 AA;  38109 MW;  F4B0829435D0943A CRC64;
     MSSFSESALE KKLSELSNSQ QSVQTLSLWI IHHRKHAALI VRVWHRELKK AKSSRKLTFL
     YLANDVIQNS KKKGPEFAKD FEGVLIDACS HVARDGDDGC KKQMDRLLTI WQERNLYRPD
     FIQQLKLTID DSESPKHKTA GQRNADDRKN LKRSYQKVQE EEEEEDDDYR GHYSPRETDA
     AAPQLTEDLV KALQDLENAA SGDAAVRQKI ASLPQEVQDV SLLEKITDKQ AADKLSKTVD
     EACLLLAEYN GRLAAELEDR RQLARMLTEY IQSQKDALNE REKKLEEYKQ KLARVTQVRK
     ELKSHIQSLP DLSLLPNVTG GLAPLPSAGD LFSTD
//
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