ID Q7ZUK9_DANRE Unreviewed; 335 AA.
AC Q7ZUK9; A0A2R8RQR5; Q6NV17;
DT 01-JUN-2003, integrated into UniProtKB/TrEMBL.
DT 01-JUN-2003, sequence version 1.
DT 24-JAN-2024, entry version 127.
DE SubName: Full=Regulation of nuclear pre-mRNA domain-containing 1B {ECO:0000313|EMBL:AAH68349.1, ECO:0000313|Ensembl:ENSDARP00000055563};
DE SubName: Full=Regulation of nuclear pre-mRNA domain-containing protein 1B {ECO:0000313|RefSeq:NP_955850.1};
GN Name=fb23h08 {ECO:0000313|RefSeq:NP_955850.1};
GN Synonyms=wu:fb23h08 {ECO:0000313|RefSeq:NP_955850.1}, zgc:55687
GN {ECO:0000313|RefSeq:NP_955850.1};
GN OrderedLocusNames=rprd1b {ECO:0000313|EMBL:AAH68349.1,
GN ECO:0000313|Ensembl:ENSDARP00000055563,
GN ECO:0000313|RefSeq:NP_955850.1, ECO:0000313|ZFIN:ZDB-GENE-030131-355};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|EMBL:AAH68349.1};
RN [1] {ECO:0000313|RefSeq:NP_955850.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=AB {ECO:0000313|RefSeq:NP_955850.1};
RX PubMed=15256591; DOI=10.1073/pnas.0403929101;
RA Amsterdam A., Nissen R.M., Sun Z., Swindell E.C., Farrington S.,
RA Hopkins N.;
RT "Identification of 315 genes essential for early zebrafish development.";
RL Proc. Natl. Acad. Sci. U.S.A. 101:12792-12797(2004).
RN [2] {ECO:0000313|EMBL:AAH68349.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=AB {ECO:0000313|EMBL:AAH48885.1};
RC TISSUE=Kidney {ECO:0000313|EMBL:AAH68349.1}, and Whole body
RC {ECO:0000313|EMBL:AAH48885.1};
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Ensembl:ENSDARP00000055563}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000055563};
RG Ensembl;
RL Submitted (FEB-2012) to UniProtKB.
RN [4] {ECO:0000313|Ensembl:ENSDARP00000055563, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000055563};
RX PubMed=23594743; DOI=10.1038/nature12111;
RG Genome Reference Consortium Zebrafish;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Eliott D.,
RA Threadgold G., Harden G., Ware D., Begum S., Mortimore B., Mortimer B.,
RA Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M.,
RA Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M.,
RA Glithero R., Howden P., Barker N., Lloyd C., Stevens C., Harley J.,
RA Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D.,
RA Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K.,
RA Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R.,
RA Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M.,
RA Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M.,
RA Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M.,
RA Woodmansey R., Clark G., Cooper J., Cooper J., Tromans A., Grafham D.,
RA Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J.,
RA Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I.,
RA Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M.,
RA Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M.,
RA Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G., Osoegawa K., Zhu B.,
RA Rapp A., Widaa S., Langford C., Yang F., Schuster S.C., Carter N.P.,
RA Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R.,
RA Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I.,
RA Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H.,
RA Rogers J., Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the human
RT genome.";
RL Nature 496:498-503(2013).
RN [5] {ECO:0000313|RefSeq:NP_955850.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=AB {ECO:0000313|RefSeq:NP_955850.1};
RX PubMed=26469318;
RA Elkon R., Milon B., Morrison L., Shah M., Vijayakumar S., Racherla M.,
RA Leitch C.C., Silipino L., Hadi S., Weiss-Gayet M., Barras E., Schmid C.D.,
RA Ait-Lounis A., Barnes A., Song Y., Eisenman D.J., Eliyahu E.,
RA Frolenkov G.I., Strome S.E., Durand B., Zaghloul N.A., Jones S.M.,
RA Reith W., Hertzano R.;
RT "RFX transcription factors are essential for hearing in mice.";
RL Nat. Commun. 6:8549-8549(2015).
RN [6] {ECO:0000313|Ensembl:ENSDARP00000150790}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000150790};
RG Ensembl;
RL Submitted (APR-2018) to UniProtKB.
RN [7] {ECO:0000313|RefSeq:NP_955850.1}
RP IDENTIFICATION.
RC STRAIN=AB {ECO:0000313|RefSeq:NP_955850.1};
RG RefSeq;
RL Submitted (SEP-2023) to UniProtKB.
CC -!- SIMILARITY: Belongs to the UPF0400 (RTT103) family.
CC {ECO:0000256|ARBA:ARBA00034310}.
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DR EMBL; BX322612; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; BC048885; AAH48885.1; -; mRNA.
DR EMBL; BC068349; AAH68349.1; -; mRNA.
DR RefSeq; NP_955850.1; NM_199556.1.
DR STRING; 7955.ENSDARP00000055563; -.
DR PaxDb; 7955-ENSDARP00000055563; -.
DR Ensembl; ENSDART00000055564.6; ENSDARP00000055563.4; ENSDARG00000038113.6.
DR Ensembl; ENSDART00000185797.1; ENSDARP00000150790.1; ENSDARG00000038113.6.
DR GeneID; 321636; -.
DR KEGG; dre:321636; -.
DR CTD; 58490; -.
DR ZFIN; ZDB-GENE-030131-355; rprd1b.
DR eggNOG; KOG2669; Eukaryota.
DR HOGENOM; CLU_055523_1_0_1; -.
DR OMA; KTWQREL; -.
DR OrthoDB; 1989419at2759; -.
DR TreeFam; TF320926; -.
DR Reactome; R-DRE-6807505; RNA polymerase II transcribes snRNA genes.
DR Proteomes; UP000000437; Chromosome 23.
DR Bgee; ENSDARG00000038113; Expressed in gastrula and 28 other cell types or tissues.
DR GO; GO:0099122; F:RNA polymerase II C-terminal domain binding; IEA:InterPro.
DR GO; GO:0000993; F:RNA polymerase II complex binding; IBA:GO_Central.
DR GO; GO:0031124; P:mRNA 3'-end processing; IBA:GO_Central.
DR CDD; cd17012; CID_RPRD1B; 1.
DR Gene3D; 1.25.40.90; -; 1.
DR Gene3D; 6.10.250.2560; -; 1.
DR InterPro; IPR006569; CID_dom.
DR InterPro; IPR008942; ENTH_VHS.
DR InterPro; IPR032337; RPRD1A/B_C.
DR InterPro; IPR047882; RPRD1B_CID.
DR PANTHER; PTHR12460; CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN; 1.
DR PANTHER; PTHR12460:SF3; REGULATION OF NUCLEAR PRE-MRNA DOMAIN-CONTAINING PROTEIN 1B; 1.
DR Pfam; PF04818; CID; 1.
DR Pfam; PF16566; CREPT; 1.
DR SMART; SM00582; RPR; 1.
DR SUPFAM; SSF48464; ENTH/VHS domain; 1.
DR PROSITE; PS51391; CID; 1.
PE 1: Evidence at protein level;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q7ZUK9};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 1..133
FT /note="CID"
FT /evidence="ECO:0000259|PROSITE:PS51391"
FT REGION 132..181
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 271..305
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 132..159
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 335 AA; 38109 MW; F4B0829435D0943A CRC64;
MSSFSESALE KKLSELSNSQ QSVQTLSLWI IHHRKHAALI VRVWHRELKK AKSSRKLTFL
YLANDVIQNS KKKGPEFAKD FEGVLIDACS HVARDGDDGC KKQMDRLLTI WQERNLYRPD
FIQQLKLTID DSESPKHKTA GQRNADDRKN LKRSYQKVQE EEEEEDDDYR GHYSPRETDA
AAPQLTEDLV KALQDLENAA SGDAAVRQKI ASLPQEVQDV SLLEKITDKQ AADKLSKTVD
EACLLLAEYN GRLAAELEDR RQLARMLTEY IQSQKDALNE REKKLEEYKQ KLARVTQVRK
ELKSHIQSLP DLSLLPNVTG GLAPLPSAGD LFSTD
//