ID Q88GU7_PSEPK Unreviewed; 728 AA.
AC Q88GU7;
DT 01-JUN-2003, integrated into UniProtKB/TrEMBL.
DT 01-JUN-2003, sequence version 1.
DT 27-MAR-2024, entry version 98.
DE SubName: Full=Cofactor of beta-methylthiolation of ribosomal protein S12 {ECO:0000313|EMBL:AAN69220.1};
GN Name=ycaO {ECO:0000313|EMBL:AAN69220.1};
GN OrderedLocusNames=PP_3620 {ECO:0000313|EMBL:AAN69220.1};
OS Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950
OS / KT2440).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=160488 {ECO:0000313|EMBL:AAN69220.1, ECO:0000313|Proteomes:UP000000556};
RN [1] {ECO:0000313|EMBL:AAN69220.1, ECO:0000313|Proteomes:UP000000556}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440
RC {ECO:0000313|Proteomes:UP000000556};
RX PubMed=12534463; DOI=10.1046/j.1462-2920.2002.00366.x;
RA Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H.,
RA Martins dos Santos V.A., Fouts D.E., Gill S.R., Pop M., Holmes M.,
RA Brinkac L., Beanan M., DeBoy R.T., Daugherty S., Kolonay J., Madupu R.,
RA Nelson W., White O., Peterson J., Khouri H., Hance I., Chris Lee P.,
RA Holtzapple E., Scanlan D., Tran K., Moazzez A., Utterback T., Rizzo M.,
RA Lee K., Kosack D., Moestl D., Wedler H., Lauber J., Stjepandic D.,
RA Hoheisel J., Straetz M., Heim S., Kiewitz C., Eisen J.A., Timmis K.N.,
RA Dusterhoft A., Tummler B., Fraser C.M.;
RT "Complete genome sequence and comparative analysis of the metabolically
RT versatile Pseudomonas putida KT2440.";
RL Environ. Microbiol. 4:799-808(2002).
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DR EMBL; AE015451; AAN69220.1; -; Genomic_DNA.
DR RefSeq; NP_745756.1; NC_002947.4.
DR RefSeq; WP_003256021.1; NC_002947.4.
DR AlphaFoldDB; Q88GU7; -.
DR STRING; 160488.PP_3620; -.
DR PaxDb; 160488-PP_3620; -.
DR GeneID; 83679668; -.
DR KEGG; ppu:PP_3620; -.
DR PATRIC; fig|160488.4.peg.3851; -.
DR eggNOG; COG1765; Bacteria.
DR eggNOG; COG1944; Bacteria.
DR HOGENOM; CLU_022530_1_0_6; -.
DR OrthoDB; 9761274at2; -.
DR PhylomeDB; Q88GU7; -.
DR BioCyc; PPUT160488:G1G01-3858-MONOMER; -.
DR Proteomes; UP000000556; Chromosome.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR Gene3D; 3.30.160.660; -; 1.
DR Gene3D; 3.30.300.20; -; 1.
DR InterPro; IPR015946; KH_dom-like_a/b.
DR InterPro; IPR003718; OsmC/Ohr_fam.
DR InterPro; IPR036102; OsmC/Ohrsf.
DR InterPro; IPR003776; YcaO-like_dom.
DR InterPro; IPR041080; YcaO_C.
DR InterPro; IPR019938; YcaO_dom_prot.
DR NCBIfam; TIGR03549; OsmC domain/YcaO domain-containing protein; 1.
DR NCBIfam; TIGR00702; YcaO-type kinase domain; 1.
DR NCBIfam; NF040716; YcaO_for_S12; 1.
DR PANTHER; PTHR39624:SF2; OSMC FAMILY PROTEIN; 1.
DR PANTHER; PTHR39624; PROTEIN INVOLVED IN RIMO-MEDIATED BETA-METHYLTHIOLATION OF RIBOSOMAL PROTEIN S12 YCAO; 1.
DR Pfam; PF02566; OsmC; 1.
DR Pfam; PF02624; YcaO; 1.
DR Pfam; PF18381; YcaO_C; 1.
DR SUPFAM; SSF82784; OsmC-like; 1.
DR PROSITE; PS51664; YCAO; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000556};
KW Ribonucleoprotein {ECO:0000313|EMBL:AAN69220.1};
KW Ribosomal protein {ECO:0000313|EMBL:AAN69220.1}.
FT DOMAIN 204..572
FT /note="YcaO"
FT /evidence="ECO:0000259|PROSITE:PS51664"
SQ SEQUENCE 728 AA; 81520 MW; C16BB92527B519BE CRC64;
MEIKVNFLDN LRLEAKFDDF TVIADQPIRY KGDGSAPGPF DYFLASSALC AAYFVKLYCQ
TRDIPTENIR LSQNNIVDPE NRYNQIFKIQ VELPEDISDK DRQGILRSID RCTVKKVVQT
GPEFVIEVVD NLDADAQGLL MPVSDTSTYI PGKDLPLEQT IANMSGILAG LGMKIEIASW
RNIVPNVWSL HVRDAQSPMC FTNGKGATKE AALASALGEF IERLNCNFFY NDQFWGEDLA
NAPFVHYPNE QWFKPGPRDA LPAEILDEHC LAIYNPDGEL RGSHLYDTNS GNTARGICSL
PFVRQSDQQV VYFPSNLIEN LFLSNGMSAG NTLAEAQVQC LSEIFERAVK REILEGELCL
PDVPQEVLAK YPAILAGIQG LEEQGFPVLV KDASLGGEFP VMCVTLMNPR TGGVFASFGA
HPSLEVALER SLTELLQGRS FEGLNDLPQP TFESHALTEP NNFVEHFIDS SGVVSWRFFS
AKADFEFVEW DFSGHGEDSN QQEAATLFGI LEDLGKEVYM AVYDNLGATA CRILVPGYSE
IYPVEDLIWD NTNRALSFRA DILNLHSLDS RSLKLLLKRL DNCDVDDYTT ITTLIGVEFD
ENTVWGQLTI LELKLLICLA VQRFEDAKEL VEAFLQFNDN TVDRGLFYQA LNVVLEVQLD
DELEMDDYEA NFRRMFGNAR MDAVLGSVDG SVRFHGLTPT SMKLEGLDRH LRLIDSYKKL
HAARAKFA
//
