ID Q89DB0_BRADU Unreviewed; 314 AA.
AC Q89DB0;
DT 01-JUN-2003, integrated into UniProtKB/TrEMBL.
DT 01-JUN-2003, sequence version 1.
DT 27-MAR-2024, entry version 87.
DE SubName: Full=Bll7529 protein {ECO:0000313|EMBL:BAC52794.1};
GN OrderedLocusNames=bll7529 {ECO:0000313|EMBL:BAC52794.1};
OS Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 /
OS NBRC 14792 / USDA 110).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Nitrobacteraceae; Bradyrhizobium.
OX NCBI_TaxID=224911 {ECO:0000313|EMBL:BAC52794.1, ECO:0000313|Proteomes:UP000002526};
RN [1] {ECO:0000313|Proteomes:UP000002526}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110
RC {ECO:0000313|Proteomes:UP000002526};
RX PubMed=12597275; DOI=10.1093/dnares/9.6.189;
RA Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S.,
RA Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M.,
RA Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.;
RT "Complete genomic sequence of nitrogen-fixing symbiotic bacterium
RT Bradyrhizobium japonicum USDA110.";
RL DNA Res. 9:189-197(2002).
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SIMILARITY: Belongs to the YkuD family.
CC {ECO:0000256|ARBA:ARBA00005992}.
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DR EMBL; BA000040; BAC52794.1; -; Genomic_DNA.
DR RefSeq; NP_774169.1; NC_004463.1.
DR AlphaFoldDB; Q89DB0; -.
DR STRING; 224911.AAV28_35320; -.
DR MEROPS; C82.003; -.
DR EnsemblBacteria; BAC52794; BAC52794; BAC52794.
DR KEGG; bja:bll7529; -.
DR PATRIC; fig|224911.5.peg.7746; -.
DR eggNOG; COG1376; Bacteria.
DR HOGENOM; CLU_042399_1_0_5; -.
DR InParanoid; Q89DB0; -.
DR OrthoDB; 9813664at2; -.
DR PhylomeDB; Q89DB0; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000002526; Chromosome.
DR GO; GO:0071972; F:peptidoglycan L,D-transpeptidase activity; IBA:GO_Central.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0018104; P:peptidoglycan-protein cross-linking; IBA:GO_Central.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF24; L,D-TRANSPEPTIDASE ERFK_SRFK-RELATED; 1.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
PE 3: Inferred from homology;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Reference proteome {ECO:0000313|Proteomes:UP000002526};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 186..313
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
SQ SEQUENCE 314 AA; 34084 MW; C9576FCC088EFE6E CRC64;
MVNQNGVSVY QTKRLLLFID HVAGADQPSA LHDACDLDET VQSTSMFKKM SVALLGSACT
LVAGATSASA FDNTVPNDPP AVLYQPQVPP APVRVASNAN MGGGFIEFLF GDGPGRGPAY
APPVYQQQPG YNDPRRLPPM GEPQMQGGYQ QGAGLQQEAV DPRQRQFDPK FEKQLVDYSG
KESAGTIVVD TPNKFLYLVE GNGRAMRYGI GVGRPGFTWS GVKAITAKRE WPDWTPPAEM
IARRPDLPRH MEGGPENPLG ARAMYLGSTL YRIHGSNEPW TIGTNVSSGC IRMRNEDVID
LYGRVNVGTR VVVM
//
