ID SDI2_ARATH Reviewed; 303 AA.
AC Q8L730; Q0WU73; Q9MAS6;
DT 29-OCT-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 27-MAR-2024, entry version 132.
DE RecName: Full=Protein SULFUR DEFICIENCY-INDUCED 2 {ECO:0000305};
GN OrderedLocusNames=At1g04770 {ECO:0000312|Araport:AT1G04770};
GN ORFNames=F13M7.24 {ECO:0000312|EMBL:AAF40459.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|EMBL:AAM98131.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP INDUCTION BY SULFUR DEPRIVATION.
RX PubMed=15842617; DOI=10.1111/j.1365-313x.2005.02363.x;
RA Maruyama-Nakashita A., Nakamura Y., Watanabe-Takahashi A., Inoue E.,
RA Yamaya T., Takahashi H.;
RT "Identification of a novel cis-acting element conferring sulfur deficiency
RT response in Arabidopsis roots.";
RL Plant J. 42:305-314(2005).
RN [6]
RP INDUCTION BY SULFUR DEPRIVATION.
RC STRAIN=cv. Columbia;
RX PubMed=17114350; DOI=10.1105/tpc.106.046458;
RA Maruyama-Nakashita A., Nakamura Y., Tohge T., Saito K., Takahashi H.;
RT "Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur
RT response and metabolism.";
RL Plant Cell 18:3235-3251(2006).
CC -!- FUNCTION: Involved in the utilization of stored sulfate under sulfur-
CC deficient conditions. {ECO:0000250|UniProtKB:Q8GXU5}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q9SUC3}.
CC -!- INDUCTION: Induced in response to sulfur deprivation.
CC {ECO:0000269|PubMed:15842617, ECO:0000269|PubMed:17114350}.
CC -!- SIMILARITY: Belongs to the MS5 protein family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF40459.1; Type=Erroneous gene model prediction;
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DR EMBL; AC004809; AAF40459.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE27741.1; -; Genomic_DNA.
DR EMBL; AY139988; AAM98131.1; -; mRNA.
DR EMBL; BT008709; AAP42722.1; -; mRNA.
DR EMBL; AK227309; BAE99325.1; -; mRNA.
DR PIR; G86180; G86180.
DR RefSeq; NP_171969.2; NM_100355.4.
DR AlphaFoldDB; Q8L730; -.
DR SMR; Q8L730; -.
DR STRING; 3702.Q8L730; -.
DR PaxDb; 3702-AT1G04770-1; -.
DR ProteomicsDB; 232924; -.
DR EnsemblPlants; AT1G04770.1; AT1G04770.1; AT1G04770.
DR GeneID; 839418; -.
DR Gramene; AT1G04770.1; AT1G04770.1; AT1G04770.
DR KEGG; ath:AT1G04770; -.
DR Araport; AT1G04770; -.
DR TAIR; AT1G04770; SDI2.
DR eggNOG; ENOG502QSSW; Eukaryota.
DR HOGENOM; CLU_057017_0_0_1; -.
DR InParanoid; Q8L730; -.
DR OMA; DQLINQW; -.
DR OrthoDB; 1064534at2759; -.
DR PRO; PR:Q8L730; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8L730; baseline and differential.
DR Genevisible; Q8L730; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0010438; P:cellular response to sulfur starvation; IEP:UniProtKB.
DR GO; GO:0009658; P:chloroplast organization; IMP:TAIR.
DR GO; GO:0010439; P:regulation of glucosinolate biosynthetic process; IGI:TAIR.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR044961; MS5/SDI1.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR36326; PROTEIN POLLENLESS 3-LIKE 2; 1.
DR PANTHER; PTHR36326:SF26; PROTEIN SULFUR DEFICIENCY-INDUCED 2; 1.
DR Pfam; PF13181; TPR_8; 1.
DR SMART; SM00028; TPR; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS50005; TPR; 1.
DR PROSITE; PS50293; TPR_REGION; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Nucleus; Reference proteome; Repeat; TPR repeat.
FT CHAIN 1..303
FT /note="Protein SULFUR DEFICIENCY-INDUCED 2"
FT /id="PRO_0000430657"
FT REPEAT 64..97
FT /note="TPR 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00339"
FT REPEAT 100..133
FT /note="TPR 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00339"
FT REPEAT 160..193
FT /note="TPR 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00339"
FT REPEAT 195..226
FT /note="TPR 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00339"
FT COILED 62..89
FT /evidence="ECO:0000255"
FT COILED 232..253
FT /evidence="ECO:0000255"
FT CONFLICT 18
FT /note="A -> P (in Ref. 4; BAE99325)"
SQ SEQUENCE 303 AA; 34660 MW; E1C02E995D67A9C7 CRC64;
MMMMIQRRGG ERQDSSAAAY NVVHKLPHGD SPYVRAKHVQ LVEKDAEAAI ELFWIAIKAR
DRVDSALKDM ALLMKQQNRA EEAIDAIQSF RDLCSRQAQE SLDNVLIDLY KKCGRIEEQV
ELLKQKLWMI YQGEAFNGKP TKTARSHGKK FQVTVEKETS RILGNLGWAY MQLMDYTAAE
AVYRKAQLIE PDANKACNLC TCLIKQGKHD EARSILFRDV LMENKEGSGD PRLMARVQEL
LSELKPQEEE AAASVSVECE VGIDEIAVVE GLDEFVKEWR RPYRTRRLPI FEEILPLRDQ
LAC
//
