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Database: UniProt
Entry: Q8LR86
LinkDB: Q8LR86
Original site: Q8LR86 
ID   WOX5_ORYSJ              Reviewed;         313 AA.
AC   Q8LR86; A0AAT0;
DT   13-NOV-2007, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2002, sequence version 1.
DT   24-JAN-2024, entry version 131.
DE   RecName: Full=WUSCHEL-related homeobox 5;
DE   AltName: Full=OsWOX5;
DE   AltName: Full=Protein WOX2;
GN   Name=WOX5; OrderedLocusNames=Os01g0840300, LOC_Os01g62310;
GN   ORFNames=P0408C03.23;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12447438; DOI=10.1038/nature01184;
RA   Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA   Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA   Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA   Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA   Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA   Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA   Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA   Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA   Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA   Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA   Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA   Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA   Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT   "The genome sequence and structure of rice chromosome 1.";
RL   Nature 420:312-316(2002).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 40-104.
RX   PubMed=16987950; DOI=10.1093/molbev/msl125;
RA   Nardmann J., Werr W.;
RT   "The shoot stem cell niche in angiosperms: expression patterns of WUS
RT   orthologues in rice and maize imply major modifications in the course of
RT   mono- and dicot evolution.";
RL   Mol. Biol. Evol. 23:2492-2504(2006).
RN   [6]
RP   NOMENCLATURE.
RX   PubMed=17351053; DOI=10.1104/pp.107.095737;
RA   Dai M., Hu Y., Zhao Y., Liu H., Zhou D.-X.;
RT   "A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required
RT   for rice leaf development.";
RL   Plant Physiol. 144:380-390(2007).
CC   -!- FUNCTION: Transcription factor which may be involved in developmental
CC       processes. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00108}.
CC   -!- SIMILARITY: Belongs to the WUS homeobox family. {ECO:0000305}.
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DR   EMBL; AP003241; BAB93218.1; -; Genomic_DNA.
DR   EMBL; AP008207; BAF06673.1; -; Genomic_DNA.
DR   EMBL; AP014957; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AM234749; CAJ84141.1; -; mRNA.
DR   RefSeq; XP_015644226.1; XM_015788740.1.
DR   AlphaFoldDB; Q8LR86; -.
DR   SMR; Q8LR86; -.
DR   STRING; 39947.Q8LR86; -.
DR   PaxDb; 39947-Q8LR86; -.
DR   GeneID; 4327390; -.
DR   KEGG; osa:4327390; -.
DR   eggNOG; ENOG502RZ2B; Eukaryota.
DR   HOGENOM; CLU_191894_0_0_1; -.
DR   InParanoid; Q8LR86; -.
DR   OrthoDB; 1217960at2759; -.
DR   Proteomes; UP000000763; Chromosome 1.
DR   Proteomes; UP000059680; Chromosome 1.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0099402; P:plant organ development; IEA:InterPro.
DR   CDD; cd00086; homeodomain; 1.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR001356; Homeobox_dom.
DR   InterPro; IPR044555; WUSCHEL-like.
DR   PANTHER; PTHR45940; WUSCHEL-RELATED HOMEOBOX 1-RELATED; 1.
DR   PANTHER; PTHR45940:SF39; WUSCHEL-RELATED HOMEOBOX 5; 1.
DR   Pfam; PF00046; Homeodomain; 1.
DR   SMART; SM00389; HOX; 1.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
DR   PROSITE; PS50071; HOMEOBOX_2; 1.
PE   2: Evidence at transcript level;
KW   Developmental protein; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW   Transcription; Transcription regulation.
FT   CHAIN           1..313
FT                   /note="WUSCHEL-related homeobox 5"
FT                   /id="PRO_0000308641"
FT   DNA_BIND        40..104
FT                   /note="Homeobox; WUS-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT   REGION          1..32
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          224..247
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          271..313
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        273..298
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   313 AA;  33206 MW;  3BD94F8D00CF9A83 CRC64;
     METTTTTLGG GGGGRAGGFS DPPSPLSPPL SPASAAAAAL ANARWTPTKE QIAVLEGLYR
     QGLRTPTAEQ IQQITARLRE HGHIEGKNVF YWFQNHKARQ RQKQKQQSFD YFSKLFRRPP
     PLPVLHRPLA RPFPLAMAPT AMPPPPPPPA TTTTAACNAG GVMFRTPSFM PVATNNASYY
     PQQQTPLLYP GMEVCPHDKS TAQPPATTTM YLQAPPSSAH LAAAAGRGAA EAEGHGRRGG
     GAGGRETLQL FPLQPTFVLP DHKPLRAGSA CAAVSPTTPS ASASFSWESE SSDSPSSEAP
     PFYDFFGVHS GGR
//
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