ID SR43C_ORYSJ Reviewed; 388 AA.
AC Q8LSQ2; A3ADT6; B9FAX9; Q0DVF8; Q10S73;
DT 30-MAY-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 27-MAR-2024, entry version 125.
DE RecName: Full=Probable signal recognition particle 43 kDa protein, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=Os03g0131900, LOC_Os03g03990;
GN ORFNames=OJ1004C08.7, OsJ_09298;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-388.
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Component of the chloroplast signal recognition particle
CC pathway. Targets proteins into the thylakoid membrane (By similarity).
CC {ECO:0000250}.
CC -!- SUBUNIT: Homodimer. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF10780.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EEE58279.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC098693; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; DP000009; ABF93821.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF10780.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM000140; EEE58279.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK099900; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015629751.1; XM_015774265.1.
DR AlphaFoldDB; Q8LSQ2; -.
DR SMR; Q8LSQ2; -.
DR STRING; 39947.Q8LSQ2; -.
DR PaxDb; 39947-Q8LSQ2; -.
DR EnsemblPlants; Os03t0131900-01; Os03t0131900-01; Os03g0131900.
DR GeneID; 4331514; -.
DR Gramene; Os03t0131900-01; Os03t0131900-01; Os03g0131900.
DR KEGG; osa:4331514; -.
DR eggNOG; KOG0504; Eukaryota.
DR HOGENOM; CLU_712464_0_0_1; -.
DR InParanoid; Q8LSQ2; -.
DR OrthoDB; 472832at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q8LSQ2; OS.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005786; C:signal recognition particle, endoplasmic reticulum targeting; IEA:UniProtKB-KW.
DR GO; GO:0097718; F:disordered domain specific binding; IEA:EnsemblPlants.
DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants.
DR GO; GO:0030674; F:protein-macromolecule adaptor activity; IEA:EnsemblPlants.
DR GO; GO:0070208; P:protein heterotrimerization; IEA:EnsemblPlants.
DR GO; GO:0009644; P:response to high light intensity; IEA:EnsemblPlants.
DR CDD; cd18628; CD3_cpSRP43_like; 1.
DR Gene3D; 2.40.50.40; -; 3.
DR Gene3D; 1.25.40.20; Ankyrin repeat-containing domain; 1.
DR InterPro; IPR002110; Ankyrin_rpt.
DR InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR030300; CPSRP43_chromodomain_3.
DR PANTHER; PTHR24203; ANKYRIN REPEAT FAMILY PROTEIN; 1.
DR PANTHER; PTHR24203:SF45; DIEGO, ISOFORM A; 1.
DR Pfam; PF13637; Ank_4; 1.
DR Pfam; PF00385; Chromo; 1.
DR SMART; SM00248; ANK; 3.
DR SMART; SM00298; CHROMO; 3.
DR SUPFAM; SSF48403; Ankyrin repeat; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 3.
DR PROSITE; PS50297; ANK_REP_REGION; 1.
DR PROSITE; PS50088; ANK_REPEAT; 2.
DR PROSITE; PS50013; CHROMO_2; 1.
PE 2: Evidence at transcript level;
KW ANK repeat; Chloroplast; Plastid; Reference proteome; Repeat;
KW Ribonucleoprotein; Signal recognition particle; Transit peptide.
FT TRANSIT 1..42
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 43..388
FT /note="Probable signal recognition particle 43 kDa protein,
FT chloroplastic"
FT /id="PRO_0000238462"
FT DOMAIN 68..137
FT /note="Chromo 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00053"
FT REPEAT 123..158
FT /note="ANK 1"
FT REPEAT 159..188
FT /note="ANK 2"
FT REPEAT 194..223
FT /note="ANK 3"
FT DOMAIN 271..332
FT /note="Chromo 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00053"
FT DOMAIN 321..379
FT /note="Chromo 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00053"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 46..66
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 388 AA; 42139 MW; 5A1DD3DBBEE1C79E CRC64;
MEAVLRHPSL SRLKPPNPNA QRTPALSITV PFRLRLPNRR LTAAAVFQDQ TNPRNPASKG
GDDDEAYGEV DRIVSSRTIK NPVFAEDGSA TTVTATEYLV EWKDGHEPSW IPAEAIAADV
VAEYETPWWT AAKKADAAEI TALLADETLR RDPDAEDAQG RTAMHFAAGL GSEECVRALA
EAGADVGRPE RAGGGLTPLH IAVGYGRPAA VRALLELGAE PEAPDGQGRT PLELVQDVLA
KTPKGNPATF ERRLALEAAA KELEKAVYEW GEVEKVVDGR GEGKWREYLV EWRDGGDREW
VRAAWVAEDL VKDFDAGLEY AVAEAVVNKR EAAEGEGKWE YLVKWVDIEE ATWEPAENVD
AELLQEFEQR QSGVAAGGDA PPPPPVAG
//
