ID Q92U64_RHIME Unreviewed; 698 AA.
AC Q92U64;
DT 01-DEC-2001, integrated into UniProtKB/TrEMBL.
DT 01-DEC-2001, sequence version 1.
DT 24-JAN-2024, entry version 126.
DE SubName: Full=Isoamylase {ECO:0000313|EMBL:CAC49675.1};
DE EC=3.2.1.68 {ECO:0000313|EMBL:CAC49675.1};
GN Name=glgX2 {ECO:0000313|EMBL:CAC49675.1};
GN ORFNames=SM_b21446 {ECO:0000313|EMBL:CAC49675.1};
OS Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium
OS meliloti).
OG Plasmid pSymB {ECO:0000313|EMBL:CAC49675.1,
OG ECO:0000313|Proteomes:UP000001976}.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX NCBI_TaxID=266834 {ECO:0000313|EMBL:CAC49675.1, ECO:0000313|Proteomes:UP000001976};
RN [1] {ECO:0000313|EMBL:CAC49675.1, ECO:0000313|Proteomes:UP000001976}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=1021 {ECO:0000313|EMBL:CAC49675.1,
RC ECO:0000313|Proteomes:UP000001976};
RC PLASMID=Plasmid pSymB {ECO:0000313|Proteomes:UP000001976};
RX PubMed=11481431; DOI=10.1073/pnas.161294698;
RA Finan T.M., Weidner S., Wong K., Buhrmester J., Chain P., Vorholter F.J.,
RA Hernandez-Lucas I., Becker A., Cowie A., Gouzy J., Golding B., Puhler A.;
RT "The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing
RT endosymbiont Sinorhizobium meliloti.";
RL Proc. Natl. Acad. Sci. U.S.A. 98:9889-9894(2001).
RN [2] {ECO:0000313|Proteomes:UP000001976}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=1021 {ECO:0000313|Proteomes:UP000001976};
RC PLASMID=Plasmid pSymB {ECO:0000313|Proteomes:UP000001976};
RX PubMed=11474104; DOI=10.1126/science.1060966;
RA Galibert F., Finan T.M., Long S.R., Puehler A., Abola P., Ampe F.,
RA Barloy-Hubler F., Barnett M.J., Becker A., Boistard P., Bothe G.,
RA Boutry M., Bowser L., Buhrmester J., Cadieu E., Capela D., Chain P.,
RA Cowie A., Davis R.W., Dreano S., Federspiel N.A., Fisher R.F., Gloux S.,
RA Godrie T., Goffeau A., Golding B., Gouzy J., Gurjal M., Hernandez-Lucas I.,
RA Hong A., Huizar L., Hyman R.W., Jones T., Kahn D., Kahn M.L., Kalman S.,
RA Keating D.H., Kiss E., Komp C., Lelaure V., Masuy D., Palm C., Peck M.C.,
RA Pohl T.M., Portetelle D., Purnelle B., Ramsperger U., Surzycki R.,
RA Thebault P., Vandenbol M., Vorhoelter F.J., Weidner S., Wells D.H.,
RA Wong K., Yeh K.-C., Batut J.;
RT "The composite genome of the legume symbiont Sinorhizobium meliloti.";
RL Science 293:668-672(2001).
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 13 family.
CC {ECO:0000256|ARBA:ARBA00008061}.
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DR EMBL; AL591985; CAC49675.1; -; Genomic_DNA.
DR PIR; C96001; C96001.
DR RefSeq; NP_437815.1; NC_003078.1.
DR RefSeq; WP_010976095.1; NC_003078.1.
DR AlphaFoldDB; Q92U64; -.
DR SMR; Q92U64; -.
DR CAZy; CBM48; Carbohydrate-Binding Module Family 48.
DR CAZy; GH13; Glycoside Hydrolase Family 13.
DR EnsemblBacteria; CAC49675; CAC49675; SM_b21446.
DR GeneID; 61601198; -.
DR KEGG; sme:SM_b21446; -.
DR PATRIC; fig|266834.11.peg.6195; -.
DR eggNOG; COG1523; Bacteria.
DR HOGENOM; CLU_011725_1_1_5; -.
DR OMA; HAFVNDQ; -.
DR OrthoDB; 3236218at2; -.
DR Proteomes; UP000001976; Plasmid pSymB.
DR GO; GO:0004133; F:glycogen debranching enzyme activity; IEA:InterPro.
DR GO; GO:0019156; F:isoamylase activity; IEA:UniProtKB-EC.
DR GO; GO:0005980; P:glycogen catabolic process; IEA:InterPro.
DR CDD; cd11326; AmyAc_Glg_debranch; 1.
DR CDD; cd02856; E_set_GDE_Isoamylase_N; 1.
DR Gene3D; 3.20.20.80; Glycosidases; 1.
DR Gene3D; 2.60.40.1180; Golgi alpha-mannosidase II; 1.
DR Gene3D; 2.60.40.10; Immunoglobulins; 1.
DR InterPro; IPR044505; GlgX_Isoamylase_N_E_set.
DR InterPro; IPR006047; Glyco_hydro_13_cat_dom.
DR InterPro; IPR004193; Glyco_hydro_13_N.
DR InterPro; IPR013780; Glyco_hydro_b.
DR InterPro; IPR011837; Glycogen_debranch_GlgX.
DR InterPro; IPR017853; Glycoside_hydrolase_SF.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR014756; Ig_E-set.
DR NCBIfam; TIGR02100; glgX_debranch; 1.
DR PANTHER; PTHR43002; GLYCOGEN DEBRANCHING ENZYME; 1.
DR PANTHER; PTHR43002:SF3; ISOAMYLASE 3, CHLOROPLASTIC; 1.
DR Pfam; PF00128; Alpha-amylase; 1.
DR Pfam; PF02922; CBM_48; 1.
DR SMART; SM00642; Aamy; 1.
DR SUPFAM; SSF51445; (Trans)glycosidases; 1.
DR SUPFAM; SSF81296; E set domains; 1.
DR SUPFAM; SSF51011; Glycosyl hydrolase domain; 1.
PE 3: Inferred from homology;
KW Glycosidase {ECO:0000313|EMBL:CAC49675.1};
KW Hydrolase {ECO:0000313|EMBL:CAC49675.1};
KW Plasmid {ECO:0000313|EMBL:CAC49675.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000001976}.
FT DOMAIN 163..571
FT /note="Glycosyl hydrolase family 13 catalytic"
FT /evidence="ECO:0000259|SMART:SM00642"
FT REGION 471..499
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 471..487
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 698 AA; 78354 MW; 4E1B4DB41E5A700C CRC64;
MNLTFSELDF MKPELGAEYT GQGTHFAVFS AHAEKIELCL FSEDGREETA RMPLPKREGD
IWSGYIEGIG PGTLYGYRAH GPYDPHNGHR FNPNKLLLDP YAKLVAGDLI WDDALFGYTI
GSPEGDLSFD ERDSAPFMVK GVVQDPTFDW AGEEAIRRPW TETIIYESHV RGMTMTHPGV
PDELRGTFLG MASDPIIEHL TKLGVSAIEL MPVQYFLDDR YLVERNLRNY WGYQTLGFFA
PHDRYLKGDR FTEFKTMVKR FHSVGIEVLM DVVYNHTAEG SERGPTLSFR GLDNFSYYRQ
SPDKPRHTYD TTGTGNTLNV AHPLVLRMVL DSLRYWVGVM HIDGFRFDLA STLGREYMEF
DREGGFFDAI RQDPILAGVK LIAEPWDVGE GGYQLGGFPP PFREWNDRFR DDVRRFWKGD
GGMVPVLAER ILGSPVQFRH SDRAATSSIN LVSAHDGFTL MDTVSYGEKH NEANGEENRD
GHSDNHSDNM GAEGPTDNRE IIEARKRRRA AMLATLMISQ GVPMVLGGDE LGNSQQGNNN
AYCQDNEIGW LDWSGADDGF VDFCRKLLAF RKDRPVLRQE RFLDGEPDEN GRVEIAWYKA
DGSPMDEDAW HDAELRLICA YICRAGQGEA PPAGEIVLVL NAGGDCEIAL PHGNGSRRWL
RVLDTAADEP FGMRASADRD TIPAQSVVAF VPQEGSNG
//