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Database: UniProt
Entry: Q96YW0
LinkDB: Q96YW0
Original site: Q96YW0 
ID   RPOD_SULTO              Reviewed;         264 AA.
AC   Q96YW0;
DT   15-MAY-2002, integrated into UniProtKB/Swiss-Prot.
DT   01-DEC-2001, sequence version 1.
DT   10-APR-2019, entry version 107.
DE   RecName: Full=DNA-directed RNA polymerase subunit D {ECO:0000255|HAMAP-Rule:MF_00320};
DE            EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00320};
GN   Name=rpoD {ECO:0000255|HAMAP-Rule:MF_00320};
GN   OrderedLocusNames=STK_20670;
OS   Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
OS   7) (Sulfolobus tokodaii).
OC   Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae;
OC   Sulfurisphaera.
OX   NCBI_TaxID=273063;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 16993 / JCM 10545 / NBRC 100140 / 7;
RX   PubMed=11572479; DOI=10.1093/dnares/8.4.123;
RA   Kawarabayasi Y., Hino Y., Horikawa H., Jin-no K., Takahashi M.,
RA   Sekine M., Baba S., Ankai A., Kosugi H., Hosoyama A., Fukui S.,
RA   Nagai Y., Nishijima K., Otsuka R., Nakazawa H., Takamiya M., Kato Y.,
RA   Yoshizawa T., Tanaka T., Kudoh Y., Yamazaki J., Kushida N., Oguchi A.,
RA   Aoki K., Masuda S., Yanagii M., Nishimura M., Yamagishi A., Oshima T.,
RA   Kikuchi H.;
RT   "Complete genome sequence of an aerobic thermoacidophilic
RT   Crenarchaeon, Sulfolobus tokodaii strain7.";
RL   DNA Res. 8:123-140(2001).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription
CC       of DNA into RNA using the four ribonucleoside triphosphates as
CC       substrates. {ECO:0000255|HAMAP-Rule:MF_00320}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:11128, Rhea:RHEA-
CC         COMP:11129, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557,
CC         ChEBI:CHEBI:83400; EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-
CC         Rule:MF_00320};
CC   -!- COFACTOR:
CC       Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_00320};
CC       Note=Binds 1 [4Fe-4S] cluster. {ECO:0000255|HAMAP-Rule:MF_00320};
CC   -!- SIMILARITY: Belongs to the archaeal RpoD/eukaryotic RPB3 RNA
CC       polymerase subunit family. {ECO:0000255|HAMAP-Rule:MF_00320}.
DR   EMBL; BA000023; BAB67166.1; -; Genomic_DNA.
DR   RefSeq; WP_010980142.1; NC_003106.2.
DR   ProteinModelPortal; Q96YW0; -.
DR   SMR; Q96YW0; -.
DR   STRING; 273063.STK_20670; -.
DR   EnsemblBacteria; BAB67166; BAB67166; STK_20670.
DR   GeneID; 1460132; -.
DR   KEGG; sto:STK_20670; -.
DR   PATRIC; fig|273063.9.peg.2355; -.
DR   eggNOG; arCOG04241; Archaea.
DR   eggNOG; COG0202; LUCA.
DR   HOGENOM; HOG000230844; -.
DR   KO; K03047; -.
DR   OMA; RGKDHAK; -.
DR   OrthoDB; 72726at2157; -.
DR   BioCyc; STOK273063:G1G3D-2360-MONOMER; -.
DR   Proteomes; UP000001015; Chromosome.
DR   GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   Gene3D; 2.170.120.12; -; 1.
DR   Gene3D; 3.30.1360.10; -; 1.
DR   HAMAP; MF_00320; RNApol_arch_D; 1.
DR   InterPro; IPR017900; 4Fe4S_Fe_S_CS.
DR   InterPro; IPR001514; DNA-dir_RNA_pol_30-40kDasu_CS.
DR   InterPro; IPR011262; DNA-dir_RNA_pol_insert.
DR   InterPro; IPR011263; DNA-dir_RNA_pol_RpoA/D/Rpb3.
DR   InterPro; IPR036603; RBP11-like.
DR   InterPro; IPR022842; RNAP_D.
DR   InterPro; IPR036643; RNApol_insert_sf.
DR   Pfam; PF01000; RNA_pol_A_bac; 1.
DR   Pfam; PF01193; RNA_pol_L; 1.
DR   SMART; SM00662; RPOLD; 1.
DR   SUPFAM; SSF55257; SSF55257; 1.
DR   SUPFAM; SSF56553; SSF56553; 1.
DR   PROSITE; PS00446; RNA_POL_D_30KD; 1.
PE   3: Inferred from homology;
KW   4Fe-4S; Complete proteome; DNA-directed RNA polymerase; Iron;
KW   Iron-sulfur; Metal-binding; Nucleotidyltransferase;
KW   Reference proteome; Transcription; Transferase.
FT   CHAIN         1    264       DNA-directed RNA polymerase subunit D.
FT                                /FTId=PRO_0000132766.
FT   METAL       184    184       Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP-
FT                                Rule:MF_00320}.
FT   METAL       204    204       Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP-
FT                                Rule:MF_00320}.
FT   METAL       207    207       Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP-
FT                                Rule:MF_00320}.
FT   METAL       210    210       Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP-
FT                                Rule:MF_00320}.
SQ   SEQUENCE   264 AA;  29620 MW;  6774A7AE1FE56DAC CRC64;
     MPISLLSKEN NSLKLIVGNY PLELVNSIRR ASILYVPVMA VDEVYFIENN SPLYDEILAH
     RLAMIPFSSD EALDHYRPPE ECAECKENCD GCYARVYLDV GANEGETVMV YSRDLKTDDP
     AIVPISGNIP IVLLGPKQKV TLEARLRLGY GKEHIKFSPV SIAVVRYYPH VEVKGNCEKA
     FEVCPEGVFG MENGKLFVKN EVACTLCEEC IKYCENNIFI SAVENKYILE IESVGSLKPE
     RILIEAGKSL LRKLNQLKKL VEGL
//
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