ID Q9C702_ARATH Unreviewed; 785 AA.
AC Q9C702; A0A178WLW1;
DT 01-JUN-2001, integrated into UniProtKB/TrEMBL.
DT 01-JUN-2001, sequence version 1.
DT 27-MAR-2024, entry version 138.
DE SubName: Full=MuDR family transposase {ECO:0000313|EMBL:AEE32491.1};
GN OrderedLocusNames=At1g49920 {ECO:0000313|EMBL:AEE32491.1};
GN ORFNames=T18C15.1 {ECO:0000313|EMBL:AEE32491.1}, T18C15_1
GN {ECO:0000313|EMBL:AAG60164.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AAG60164.1};
RN [1] {ECO:0000313|EMBL:AEE32491.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2] {ECO:0000313|EMBL:AAG60164.1}
RP NUCLEOTIDE SEQUENCE.
RA Lin X., Kaul S., Town C.D., Benito M., Creasy T.H., Haas B.J., Wu D.,
RA Maiti R., Ronning C.M., Koo H., Fujii C.Y., Utterback T.R., Barnstead M.E.,
RA Bowman C.L., White O., Nierman W.C., Fraser C.M.;
RT "Arabidopsis thaliana chromosome 1 BAC T18C15 genomic sequence.";
RL Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AEE32491.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AEE32491.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; AC074110; AAG60164.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32491.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM57860.1; -; Genomic_DNA.
DR RefSeq; NP_001319184.1; NM_001333404.1.
DR RefSeq; NP_175414.1; NM_103879.3.
DR AlphaFoldDB; Q9C702; -.
DR STRING; 3702.Q9C702; -.
DR PaxDb; 3702-AT1G49920-1; -.
DR ProteomicsDB; 185788; -.
DR EnsemblPlants; AT1G49920.1; AT1G49920.1; AT1G49920.
DR EnsemblPlants; AT1G49920.2; AT1G49920.2; AT1G49920.
DR GeneID; 841415; -.
DR Gramene; AT1G49920.1; AT1G49920.1; AT1G49920.
DR Gramene; AT1G49920.2; AT1G49920.2; AT1G49920.
DR KEGG; ath:AT1G49920; -.
DR TAIR; AT1G49920; -.
DR eggNOG; ENOG502QSE3; Eukaryota.
DR HOGENOM; CLU_019861_0_0_1; -.
DR OMA; CKWSICA; -.
DR OrthoDB; 690590at2759; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C702; baseline and differential.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR018289; MULE_transposase_dom.
DR InterPro; IPR004332; Transposase_MuDR.
DR InterPro; IPR006564; Znf_PMZ.
DR InterPro; IPR007527; Znf_SWIM.
DR PANTHER; PTHR31973:SF177; MUDR FAMILY TRANSPOSASE; 1.
DR PANTHER; PTHR31973; POLYPROTEIN, PUTATIVE-RELATED; 1.
DR Pfam; PF03108; DBD_Tnp_Mut; 1.
DR Pfam; PF10551; MULE; 1.
DR Pfam; PF04434; SWIM; 1.
DR SMART; SM00575; ZnF_PMZ; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
DR PROSITE; PS50966; ZF_SWIM; 1.
PE 1: Evidence at protein level;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q9C702,
KW ECO:0007829|ProteomicsDB:Q9C702};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00325};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00325}.
FT DOMAIN 628..682
FT /note="SWIM-type"
FT /evidence="ECO:0000259|PROSITE:PS50966"
FT REGION 118..168
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 725..785
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 145..168
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 747..785
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 785 AA; 90366 MW; 8B73583A3B0B7CC2 CRC64;
MAEREVVVLC YWNCHIKHGP DGVYFEGSTP KEMRVKKNAD FSRFLDELYL ITGFDKQKSK
LEIVARYPVV QSPNKFRYLL HPVANDIHWE KMLEVPSNHP CINSVEFYLE AKPKPNDPPP
APWSLLPMGM NPQKRQKSRH QVVGKRQKST QQEVGDTNSG SGSGSTPTLV SGLWLEGDTM
RVGLCFKDLA EMKKAVDWCS IKRRQKCLLR ETEKDVYVVE CERWHCKWSI CASRREEDGL
FEITECSGPH DCYPEHLNDF DAECIPFQIE RVVRVQPTLS TAELDKWWEK KFGFALDQVV
EHCSEGLVED AKVKAIKRFF GDWDQSFRLI PKLMSVLHSS NGLLVDWQYD SLTHDPEHAS
FRGLFWAFSQ SIQGFQHCRP LIVVDTKNLG GKYKMKLMIA SAFDATNQYF PLAFAVTKEV
SVDSWRWFLT RIREKVTQRQ GICLISSPDP DILAVINEPG SQWKEPWAYH RFCLYHLCSK
LCSVSPGFDY NMHFLVDEAG SSSQKEEFDS YMKEIKERNP EAWKWLDQFP PHQWALAHDD
GRRYGIMRID TEALFAVCKR FRKVAMAGGV MLLFGQLKDA FAESFKLSRG SLKHGDVYTE
HVMEKLEEFE TDSDTWVITI TPLERDAYQV SMAPKKKTRL MGQSNDSTSG IVQLNDTTCT
CGEFQKNKFP CLHALAVCDE LKINPLQYVD DCYTVERYHK TYSAKFSPVP ELSAWPEAYG
VPTLIPPVIE PPPPKVSGKG KEKDTEDDHL EEDEDGDDDE EEEDDDVDDD EEDDDDVDDD
EDDEW
//
