ID Q9FYD1_ARATH Unreviewed; 551 AA.
AC Q9FYD1;
DT 01-MAR-2001, integrated into UniProtKB/TrEMBL.
DT 01-MAR-2001, sequence version 1.
DT 27-MAR-2024, entry version 165.
DE SubName: Full=Zinc knuckle (CCHC-type) family protein {ECO:0000313|EMBL:AEE77811.1};
GN Name=F22J12_30 {ECO:0000313|EMBL:CAC05633.1};
GN OrderedLocusNames=At3g43590 {ECO:0000313|Araport:AT3G43590,
GN ECO:0000313|EMBL:AAM20675.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:CAC05633.1};
RN [1] {ECO:0000313|EMBL:AEE77811.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130713; DOI=10.1038/35048706;
RG European Union Chromosome 3 Arabidopsis Sequencing Consortium;
RG Institute for Genomic Research;
RG Kazusa DNA Research Institute;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M.,
RA Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N.,
RA Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L.,
RA Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S.,
RA Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N.,
RA Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P.,
RA Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S.,
RA Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S.,
RA Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2] {ECO:0000313|EMBL:CAC05633.1}
RP NUCLEOTIDE SEQUENCE.
RA EU Arabidopsis sequencing project;
RL Submitted (AUG-2000) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:CAC05633.1}
RP NUCLEOTIDE SEQUENCE.
RA Bloecker H., Mewes H.W., Rudd S., Lemcke K., Mayer K.F.X., Quetier F.,
RA Salanoubat M.;
RL Submitted (AUG-2000) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AAM20675.1}
RP NUCLEOTIDE SEQUENCE.
RA Nguyen M., Karlin-Neumann G., Southwick A., Lam B., Miranda M., Palm C.J.,
RA Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:AAN72214.1}
RP NUCLEOTIDE SEQUENCE.
RA Nguyen M., Karlin-Neumann G., Southwick A., Tripp M., Miranda M.,
RA Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R.,
RA Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J.,
RA Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M.,
RA Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RL Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|EMBL:AEE77811.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [7] {ECO:0000313|EMBL:AEE77811.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [8] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; AY099824; AAM20675.1; -; mRNA.
DR EMBL; BT002203; AAN72214.1; -; mRNA.
DR EMBL; CP002686; AEE77811.1; -; Genomic_DNA.
DR EMBL; AL391734; CAC05633.1; -; Genomic_DNA.
DR RefSeq; NP_189945.1; NM_114227.5.
DR AlphaFoldDB; Q9FYD1; -.
DR IntAct; Q9FYD1; 2.
DR STRING; 3702.Q9FYD1; -.
DR PaxDb; 3702-AT3G43590-1; -.
DR ProteomicsDB; 189898; -.
DR EnsemblPlants; AT3G43590.1; AT3G43590.1; AT3G43590.
DR GeneID; 823456; -.
DR Gramene; AT3G43590.1; AT3G43590.1; AT3G43590.
DR KEGG; ath:AT3G43590; -.
DR Araport; AT3G43590; -.
DR TAIR; AT3G43590; -.
DR eggNOG; KOG4400; Eukaryota.
DR HOGENOM; CLU_027607_1_0_1; -.
DR OMA; GWIMDDP; -.
DR OrthoDB; 473524at2759; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9FYD1; baseline and differential.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 5.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR46978; ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN; 1.
DR PANTHER; PTHR46978:SF1; ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN; 1.
DR Pfam; PF00098; zf-CCHC; 4.
DR SMART; SM00343; ZnF_C2HC; 8.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 3.
DR PROSITE; PS50158; ZF_CCHC; 5.
PE 1: Evidence at protein level;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q9FYD1,
KW ECO:0007829|ProteomicsDB:Q9FYD1};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 168..182
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 210..225
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 287..300
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 327..342
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 358..373
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 1..42
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 370..539
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 14..42
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 382..409
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 422..454
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 462..479
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 486..507
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 508..523
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 551 AA; 62569 MW; 51A4CADBB6F13C2B CRC64;
MPRQNKDEKF VFDDGEDEDR EDPVAITEVD NGEEEDDDEA NEDLSLKILE KALSRRDVGN
KLDSDLSSDS GVVSTVMVNG VKSKVKKSES SKKMKRNKLE ADHEIPIVWN DQDEEKVVEE
IVKGEGEDDE VERSDEPKTE ETASNLVLKK LLRGARYFDP PDAGWVSCYS CGEQGHTSFN
CPTPTKRRKP CFICGSLEHG AKQCSKGHDC YICKKTGHRA KDCPDKYKNG SKGAVCLRCG
DFGHDMILCK YEYSKEDLKD VQCYICKSFG HLCCVEPGNS LSWAVSCYRC GQLGHSGLAC
GRHYEESNEN DSATPERLFN SREASECYRC GEEGHFAREC PNSSSISTSH GRESQTLCYR
CNGSGHFARE CPNSSQVSKR DRETSTTSHK SRKKNKENSE HDSTPHESNG KTKKKKKKKT
HKEEQPQTSP RKRKHRGGWI TEEPEEESFQ RGKMRRPKSP ITPSGYNRSP STHIGHNYRS
PKFNSGGHYP GSQSSRHHSG PSPSRWQPSH QHHHHHQHLH HHHQNHSYEP APPRHGRANR
YSEFAGNYER W
//
