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Database: UniProt
Entry: Q9LGL5_ORYSJ
LinkDB: Q9LGL5_ORYSJ
Original site: Q9LGL5_ORYSJ 
ID   Q9LGL5_ORYSJ            Unreviewed;       597 AA.
AC   Q9LGL5;
DT   01-OCT-2000, integrated into UniProtKB/TrEMBL.
DT   01-OCT-2000, sequence version 1.
DT   23-MAY-2018, entry version 122.
DE   SubName: Full=Os01g0160100 protein {ECO:0000313|EMBL:BAF04002.1};
DE   SubName: Full=Putative pyruvate decarboxylase {ECO:0000313|EMBL:BAA96769.1};
DE   SubName: Full=Similar to Zea mays mRNA for pyruvate decarboxylase {ECO:0000313|EMBL:BAB08208.1};
GN   OrderedLocusNames=Os01g0160100 {ECO:0000313|EMBL:BAF04002.1};
GN   ORFNames=OsJ_00466 {ECO:0000313|EMBL:EAZ10634.1}, OSNPB_010160100
GN   {ECO:0000313|EMBL:BAS70518.1}, P0041E11.26
GN   {ECO:0000313|EMBL:BAA96769.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:BAA96769.1};
RN   [1] {ECO:0000313|EMBL:BAB08208.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Sasaki T., Matsumoto T., Yamamoto K.;
RT   "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 1, PAC
RT   clone:P0433F09.";
RL   Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:BAA96769.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=12447438; DOI=10.1038/nature01184;
RA   Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA   Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA   Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M.,
RA   Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C.,
RA   Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M.,
RA   Ikeno M., Itoh S., Itoh T., Itoh Y., Itoh Y., Iwabuchi A., Kamiya K.,
RA   Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I.,
RA   Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y.,
RA   Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M.,
RA   Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M.,
RA   Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K.,
RA   Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K.,
RA   Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.I., Eun M.Y.,
RA   Yano M., Jiang J., Gojobori T.;
RT   "The genome sequence and structure of rice chromosome 1.";
RL   Nature 420:312-316(2002).
RN   [3] {ECO:0000313|EMBL:BAF04002.1, ECO:0000313|Proteomes:UP000059680}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680};
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [4] {ECO:0000313|EMBL:EAZ10634.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
RA   Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
RA   Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
RA   Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
RA   Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
RA   Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
RA   Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
RA   Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
RA   Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
RA   Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N.,
RA   Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5] {ECO:0000313|EMBL:BAF04002.1}
RP   NUCLEOTIDE SEQUENCE.
RG   IRGSP(International Rice Genome Sequencing Project);
RT   "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 1.";
RL   Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases.
RN   [6] {ECO:0000313|EMBL:BAF04002.1}
RP   NUCLEOTIDE SEQUENCE.
RG   The Rice Annotation Project (RAP);
RT   "The Second Rice Annotation Project Meeting (RAP2).";
RL   Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases.
RN   [7] {ECO:0000313|EMBL:BAF04002.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=16381971; DOI=10.1093/nar/gkj094;
RA   Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K.,
RA   Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K.,
RA   Itoh T., Gojobori T., Sasaki T.;
RT   "The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa
RT   ssp. japonica genome information.";
RL   Nucleic Acids Res. 34:D741-D744(2006).
RN   [8] {ECO:0000313|EMBL:BAF04002.1}
RP   NUCLEOTIDE SEQUENCE.
RG   The Rice Annotation Project (RAP);
RA   Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B.,
RA   Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T.,
RA   Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B.,
RA   Harada E., Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S.,
RA   Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P.,
RA   Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P.,
RA   Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D.,
RA   Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R.,
RA   Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N.,
RA   Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S.,
RA   Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N.,
RA   Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y.,
RA   Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y.,
RA   Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T.,
RA   Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A.,
RA   Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y.,
RA   Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.;
RT   "Curated Genome Annotation of Oryza sativa ssp. japonica and
RT   Comparative Genome Analysis with Arabidopsis thaliana.";
RL   Genome Res. 17:175-183(2007).
RN   [9] {ECO:0000313|EMBL:BAF04002.1}
RP   NUCLEOTIDE SEQUENCE.
RG   The Rice Annotation Project (RAP);
RA   Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y.,
RA   Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y.,
RA   Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H.,
RA   Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y.,
RA   Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K.,
RA   Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K.,
RA   Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q.,
RA   Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C.,
RA   Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P.,
RA   Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M.,
RA   Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M.,
RA   Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H.,
RA   Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A.,
RA   Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G.,
RA   Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A.,
RA   Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C.,
RA   Piegu B., Panaud O., Echeverria M.;
RT   "The Rice Annotation Project Database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [10] {ECO:0000313|EMBL:EAZ10634.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S.,
RA   Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J.,
RA   Samudrala R., Kristiansen K., Wong G.K.-S.;
RT   "Improved gene annotation of the rice (Oryza sativa) genomes.";
RL   Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
RN   [11] {ECO:0000313|EMBL:BAS70518.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=23299411; DOI=10.1093/pcp/pcs183;
RA   Sakai H., Lee S.S., Tanaka T., Numa H., Kim J., Kawahara Y.,
RA   Wakimoto H., Yang C.C., Iwamoto M., Abe T., Yamada Y., Muto A.,
RA   Inokuchi H., Ikemura T., Matsumoto T., Sasaki T., Itoh T.;
RT   "Rice Annotation Project Database (RAP-DB): an integrative and
RT   interactive database for rice genomics.";
RL   Plant Cell Physiol. 54:E6-E6(2013).
RN   [12] {ECO:0000313|EMBL:BAS70518.1, ECO:0000313|Proteomes:UP000059680}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680};
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
RA   McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
RA   Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
RA   Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
RA   Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using
RT   next generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [13] {ECO:0000313|EMBL:BAS70518.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Millard Andrew;
RL   Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the TPP enzyme family.
CC       {ECO:0000256|RuleBase:RU362132}.
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DR   EMBL; AP002521; BAA96769.1; -; Genomic_DNA.
DR   EMBL; AP002539; BAB08208.1; -; Genomic_DNA.
DR   EMBL; AP008207; BAF04002.1; -; Genomic_DNA.
DR   EMBL; AP014957; BAS70518.1; -; Genomic_DNA.
DR   EMBL; CM000138; EAZ10634.1; -; Genomic_DNA.
DR   RefSeq; XP_015615261.1; XM_015759775.1.
DR   UniGene; Os.1445; -.
DR   STRING; 39947.LOC_Os01g06660.1; -.
DR   EnsemblPlants; Os01t0160100-01; Os01t0160100-01; Os01g0160100.
DR   GeneID; 4324066; -.
DR   Gramene; Os01t0160100-01; Os01t0160100-01; Os01g0160100.
DR   KEGG; osa:4324066; -.
DR   eggNOG; KOG1184; Eukaryota.
DR   eggNOG; COG3961; LUCA.
DR   KO; K01568; -.
DR   OMA; ERCIHGR; -.
DR   OrthoDB; EOG093605YM; -.
DR   Proteomes; UP000059680; Chromosome 1.
DR   ExpressionAtlas; Q9LGL5; differential.
DR   GO; GO:0005622; C:intracellular; IBA:GO_Central.
DR   GO; GO:0016831; F:carboxy-lyase activity; IBA:GO_Central.
DR   GO; GO:0000287; F:magnesium ion binding; IEA:InterPro.
DR   GO; GO:0030976; F:thiamine pyrophosphate binding; IEA:InterPro.
DR   InterPro; IPR029035; DHS-like_NAD/FAD-binding_dom.
DR   InterPro; IPR029061; THDP-binding.
DR   InterPro; IPR012000; Thiamin_PyroP_enz_cen_dom.
DR   InterPro; IPR012001; Thiamin_PyroP_enz_TPP-bd_dom.
DR   InterPro; IPR012110; TPP_enzyme.
DR   InterPro; IPR011766; TPP_enzyme-bd_C.
DR   Pfam; PF02775; TPP_enzyme_C; 1.
DR   Pfam; PF00205; TPP_enzyme_M; 1.
DR   Pfam; PF02776; TPP_enzyme_N; 1.
DR   PIRSF; PIRSF036565; Pyruvt_ip_decrb; 1.
DR   SUPFAM; SSF52467; SSF52467; 1.
DR   SUPFAM; SSF52518; SSF52518; 2.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000059680};
KW   Magnesium {ECO:0000256|PIRSR:PIRSR036565-2};
KW   Metal-binding {ECO:0000256|PIRSR:PIRSR036565-2};
KW   Pyruvate {ECO:0000313|EMBL:BAA96769.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000059680};
KW   Thiamine pyrophosphate {ECO:0000256|RuleBase:RU362132}.
FT   DOMAIN       29    204       TPP_enzyme_N. {ECO:0000259|Pfam:PF02776}.
FT   DOMAIN      233    350       TPP_enzyme_M. {ECO:0000259|Pfam:PF00205}.
FT   DOMAIN      443    568       TPP_enzyme_C. {ECO:0000259|Pfam:PF02775}.
FT   COILED      170    190       {ECO:0000256|SAM:Coils}.
FT   METAL       474    474       Magnesium. {ECO:0000256|PIRSR:
FT                                PIRSR036565-2}.
FT   METAL       501    501       Magnesium. {ECO:0000256|PIRSR:
FT                                PIRSR036565-2}.
FT   METAL       503    503       Magnesium; via carbonyl oxygen.
FT                                {ECO:0000256|PIRSR:PIRSR036565-2}.
SQ   SEQUENCE   597 AA;  64140 MW;  CE1302E33324DEDC CRC64;
     MDTTIGSVPT ASDAAAPAPA ANSAPREATL GRHLARRLAE VGARDVFTVP GDFNLTLLDE
     LEAEAGAGHG GVRLVGCCNE LNAAYAADGY ARARGGGVGA CAVTFTVGGL SAINAVAGAF
     SENLPVVCIV GGPNSNDYGS NRILHHTIGL PDFTQELRCF QTVTCYQAVV NNLEDAHEQI
     DAAISTAIKE SKPVYISISC NLPSIPHPTF SRHPVPFFLS PRLSNQMNLE AAVETAAAFL
     NKAVKPVLVG GPKMRVAKAC KSFVELADAC GYPVAVMPSA KGLVPEHHPR FIGTYWGAVS
     TPFCAEIVES ADAYLFAGPI FNDYSSVGYS LLLKKEKAII VQPDRVVIGH GPAFGCVLMK
     DFLHALSARL KKNTAAYENY RRIYVPPGEP PLSEPGEPLR VNVLFQHIQK MLSANSAVIA
     ETGDSWFNCQ KLKLPEGCGY EFQMQYGSIG WSVGATLGYA KAAKDKRVIA CIGDGSFQVT
     AQEVSTMLRW GQKSIIFLIN NGGYTIEVEI HDGPYNVIKN WNYTGVVEAF HNGEGKCYTA
     KVRTEEELKE AIEEAQGPKK DCLCFIEVIV HKDDTSKELL EWGSRVSAAN SRPPNPQ
//
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