ID Q9LHA6_ARATH Unreviewed; 370 AA.
AC Q9LHA6;
DT 01-OCT-2000, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2000, sequence version 1.
DT 27-MAR-2024, entry version 151.
DE SubName: Full=AT3g28220/T19D11_3 {ECO:0000313|EMBL:AAK50113.1};
DE SubName: Full=TRAF-like family protein {ECO:0000313|EMBL:AEE77418.1};
GN OrderedLocusNames=At3g28220 {ECO:0000313|Araport:AT3G28220,
GN ECO:0000313|EMBL:AEE77418.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:BAB02639.1};
RN [1] {ECO:0000313|EMBL:BAB02639.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Nakamura Y.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2] {ECO:0000313|EMBL:AEE77418.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130713; DOI=10.1038/35048706;
RG European Union Chromosome 3 Arabidopsis Sequencing Consortium;
RG Institute for Genomic Research;
RG Kazusa DNA Research Institute;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M.,
RA Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N.,
RA Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L.,
RA Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S.,
RA Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N.,
RA Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P.,
RA Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S.,
RA Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S.,
RA Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [3] {ECO:0000313|EMBL:AAK50113.1}
RP NUCLEOTIDE SEQUENCE.
RA Shinn P., Chen H., Cheuk R., Kim C.J., Meyers M.C., Banh J., Bowser L.,
RA Carninci P., Chung M.K., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA Liu S.X., Miranda M., Narusaka M., Nguyen M., Palm C.J., Pham P.K.,
RA Quach H.L., Sakano H., Sakurai T., Satou M., Seki M., Southwick A.,
RA Toriumi M., Yamada K., Yu G., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Arabidopsis cDNA clones.";
RL Submitted (APR-2001) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AAM91418.1}
RP NUCLEOTIDE SEQUENCE.
RA Cheuk R., Chen H., Kim C.J., Shinn P., Banh J., Bowser L., Carninci P.,
RA Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T.,
RA Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L.,
RA Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M.,
RA Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W.,
RA Theologis A., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUL-2002) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:AEE77418.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|EMBL:AEE77418.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [7] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; AF372976; AAK50113.1; -; mRNA.
DR EMBL; AY133588; AAM91418.1; -; mRNA.
DR EMBL; CP002686; AEE77418.1; -; Genomic_DNA.
DR EMBL; AP002056; BAB02639.1; -; Genomic_DNA.
DR RefSeq; NP_189462.1; NM_113741.4.
DR AlphaFoldDB; Q9LHA6; -.
DR SMR; Q9LHA6; -.
DR IntAct; Q9LHA6; 106.
DR STRING; 3702.Q9LHA6; -.
DR PaxDb; 3702-AT3G28220-1; -.
DR ProteomicsDB; 189289; -.
DR EnsemblPlants; AT3G28220.1; AT3G28220.1; AT3G28220.
DR GeneID; 822448; -.
DR Gramene; AT3G28220.1; AT3G28220.1; AT3G28220.
DR KEGG; ath:AT3G28220; -.
DR Araport; AT3G28220; -.
DR TAIR; AT3G28220; -.
DR eggNOG; KOG1987; Eukaryota.
DR HOGENOM; CLU_040595_2_1_1; -.
DR OMA; WFSHRET; -.
DR OrthoDB; 674326at2759; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LHA6; baseline and differential.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR CDD; cd00121; MATH; 2.
DR InterPro; IPR002083; MATH/TRAF_dom.
DR InterPro; IPR008974; TRAF-like.
DR PANTHER; PTHR46162; TRAF-LIKE FAMILY PROTEIN; 1.
DR PANTHER; PTHR46162:SF40; TRAF-LIKE FAMILY PROTEIN; 1.
DR Pfam; PF00917; MATH; 2.
DR SMART; SM00061; MATH; 2.
DR SUPFAM; SSF49599; TRAF domain-like; 2.
DR PROSITE; PS50144; MATH; 2.
PE 1: Evidence at protein level;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q9LHA6,
KW ECO:0007829|ProteomicsDB:Q9LHA6};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 21..41
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 80..216
FT /note="MATH"
FT /evidence="ECO:0000259|PROSITE:PS50144"
FT DOMAIN 236..359
FT /note="MATH"
FT /evidence="ECO:0000259|PROSITE:PS50144"
SQ SEQUENCE 370 AA; 42887 MW; 6BD8B1514F5B6B35 CRC64;
MSEKGLIKKE DHMFQEEKRK TNYGAIGLAC FISCFFAFQF MKIVTTQPST TTTSSIAVID
SPMSSHKLSD RREIWRVIPP STYCLKIESF IKFATSPNAE KYESRPFESG GYNWTLIVYP
KGNIKEGAPL NYVSMYVQID NSTLLNSPKE VYAEVKFFIY NRKEDKYLTY QETDAKRFFL
FKPYWGYGNV RPYTDVANPN AGWLFDGDNV LFGVDVFVTE VFNKWEVFSF TKSLHDRLYK
WTLPNFSSLE KQYYVSDKFV IGGRSWALKV YPSGDGEGQG NSLSLYVVAV DVKPYDKIYL
KAKLRIINQR DSKHMEKKVE SWSDQANSWG FQKFVPFADL KDTSKGLLVN DTLKMEIEFE
DFSNTKYFPS
//
