ID Q9LKC2_ARATH Unreviewed; 453 AA.
AC Q9LKC2;
DT 01-OCT-2000, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2000, sequence version 1.
DT 27-MAR-2024, entry version 124.
DE SubName: Full=At5g43870 {ECO:0000313|EMBL:ABI49467.1};
DE SubName: Full=Auxin canalization protein (DUF828) {ECO:0000313|EMBL:AED95019.1};
GN Name=FL1 {ECO:0000313|TAIR:AT5G43870};
GN OrderedLocusNames=At5g43870 {ECO:0000313|Araport:AT5G43870,
GN ECO:0000313|EMBL:AED95019.1};
GN ORFNames=F6B6.1 {ECO:0000313|EMBL:AED95019.1}, F6B6_1
GN {ECO:0000313|EMBL:AED95019.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:BAA98067.1};
RN [1] {ECO:0000313|EMBL:BAA98067.1}
RP NUCLEOTIDE SEQUENCE.
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (JUL-1999) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:AED95019.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130714; DOI=10.1038/35048507;
RG Kazusa DNA Research Institute;
RG Cold Spring Harbor and Washington University in St Louis Sequencing Consortium;
RG European Union Arabidopsis Genome Sequencing Consortium;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., See L.H., Vil D., Baker J.,
RA Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Dusterhoft A., Stiekema W., Pohl T., Entian K.D.,
RA Terryn N., Hartley N., Bent E., Johnson S., Langham S.A., McCullagh B.,
RA Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H.,
RA Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Lankhorst R.K., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S.,
RA Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J.,
RA Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K., Rudd S., Schoof H.,
RA Schueller C., Zaccaria P., Mewes H.W., Bevan M., Fransz P.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [3] {ECO:0000313|EMBL:ABI49467.1}
RP NUCLEOTIDE SEQUENCE.
RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF Clones.";
RL Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AED95019.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:AED95019.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; BT028920; ABI49467.1; -; mRNA.
DR EMBL; CP002688; AED95019.1; -; Genomic_DNA.
DR EMBL; AP000368; BAA98067.1; -; Genomic_DNA.
DR RefSeq; NP_199200.1; NM_123754.6.
DR AlphaFoldDB; Q9LKC2; -.
DR IntAct; Q9LKC2; 1.
DR STRING; 3702.Q9LKC2; -.
DR PaxDb; 3702-AT5G43870-1; -.
DR ProteomicsDB; 189695; -.
DR EnsemblPlants; AT5G43870.1; AT5G43870.1; AT5G43870.
DR GeneID; 834409; -.
DR Gramene; AT5G43870.1; AT5G43870.1; AT5G43870.
DR Araport; AT5G43870; -.
DR TAIR; AT5G43870; FL1.
DR eggNOG; ENOG502QRXH; Eukaryota.
DR HOGENOM; CLU_033023_0_0_1; -.
DR OMA; EMANPMA; -.
DR OrthoDB; 463248at2759; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LKC2; baseline and differential.
DR GO; GO:0006892; P:post-Golgi vesicle-mediated transport; IDA:TAIR.
DR InterPro; IPR013666; PH_pln.
DR InterPro; IPR040269; VAB.
DR InterPro; IPR008546; VAN3-bd-like_auxin_canal.
DR PANTHER; PTHR31351; EXPRESSED PROTEIN; 1.
DR PANTHER; PTHR31351:SF27; PH DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF05703; Auxin_canalis; 1.
DR Pfam; PF08458; PH_2; 1.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q9LKC2,
KW ECO:0007829|ProteomicsDB:Q9LKC2};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548}.
FT DOMAIN 22..307
FT /note="VAN3-binding protein-like auxin canalisation"
FT /evidence="ECO:0000259|Pfam:PF05703"
FT DOMAIN 341..445
FT /note="Pleckstrin-like plant"
FT /evidence="ECO:0000259|Pfam:PF08458"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 108..132
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 8..22
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 108..130
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 453 AA; 48644 MW; 68CFF1F706BBFEE3 CRC64;
MDQKSKTIGE QWWRSNPTFK PPETPLDSME FLSRTWSASA TEVSRAVVAS PPTSQPPQMR
FSEIQNGSSD VTLVPEDEEN GIVLGNTFSF ASSETSLMVM ERIMAQSPEI SSPRTSGRLS
HSSFTDSPPI SPSDIDDFKQ FYRVSPSFNG HIRGSSAIPG TAGGSKTVGR WLKDRREKKR
EETRAQNAQL HAAVSVAGVA AAVAAIAAAT ASQSSSGTDE QVAKNDSAVA SAATLVAAKC
VEAAEIMGAD REHLASVVSS AVNVRSAGDI MTLTAAAATA LRGAAQLKAR ALKEVWNIAA
VIPVDKGTPK GGGGGYRGGE LAPVDNFLGI CSKELLAKGC ELLKRTRKGD LHWKVVSIYI
NRTKQVILKT KSKHVAGTIT KKKKNVVVGL VKGLPAWPGR EMLEGGENLR YFGLKTVEKR
VIEFECKSQR EYDLWTQGVS MLLSIASDRK HKC
//
