ID Q9LSK7_ARATH Unreviewed; 480 AA.
AC Q9LSK7;
DT 01-OCT-2000, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2000, sequence version 1.
DT 27-MAR-2024, entry version 174.
DE SubName: Full=At3g18035 {ECO:0000313|EMBL:AAP31950.1};
DE SubName: Full=Linker histone protein, putative {ECO:0000313|EMBL:AAO00794.1};
DE SubName: Full=Winged-helix DNA-binding transcription factor family protein {ECO:0000313|EMBL:AEE76037.1};
GN Name=HON4 {ECO:0000313|EMBL:AEE76037.1, ECO:0000313|TAIR:AT3G18035};
GN Synonyms=HISTONE H1 {ECO:0000313|EMBL:AEE76037.1};
GN OrderedLocusNames=At3g18035 {ECO:0000313|Araport:AT3G18035,
GN ECO:0000313|EMBL:AAO00794.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:BAB01332.1};
RN [1] {ECO:0000313|EMBL:BAB01332.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Nakamura Y.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2] {ECO:0000313|EMBL:AEE76037.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130713; DOI=10.1038/35048706;
RG European Union Chromosome 3 Arabidopsis Sequencing Consortium;
RG Institute for Genomic Research;
RG Kazusa DNA Research Institute;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M.,
RA Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N.,
RA Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L.,
RA Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S.,
RA Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N.,
RA Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P.,
RA Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S.,
RA Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S.,
RA Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [3] {ECO:0000313|EMBL:AAO00794.1}
RP NUCLEOTIDE SEQUENCE.
RA Southwick A., Nguyen M., Tripp M., Palm C.J., Jones T., Wu T., Carninci P.,
RA Chen H., Cheuk R., Chan M.M., Chang C.H., Dale J.M., Deng J.M.,
RA Hayashizaki Y., Hsuan V.W., Lee J.M., Ishida J., Kamiya A., Kawai J.,
RA Kim C.J., Narusaka M., Onodera C.S., Quach H.L., Sakurai T., Satou M.,
RA Seki M., Shinn P., Tang C.C., Toroumi M., Wong C., Wu H.C., Yamada K.,
RA Yu G., Yuan S., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RL Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AAP31950.1}
RP NUCLEOTIDE SEQUENCE.
RA Shinn P., Chen H., Cheuk R., Kim C.J., Bowser L., Carninci P., Dale J.M.,
RA Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A.,
RA Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M.,
RA Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M.,
RA Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G.,
RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0007829|PubMed:17272265}
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=17272265; DOI=10.1074/mcp.M600408-MCP200;
RA Maor R., Jones A., Nuhse T.S., Studholme D.J., Peck S.C., Shirasu K.;
RT "Multidimensional protein identification technology (MudPIT) analysis of
RT ubiquitinated proteins in plants.";
RL Mol. Cell. Proteomics 6:601-610(2007).
RN [6] {ECO:0000313|EMBL:AEE76037.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [7] {ECO:0000313|EMBL:AEE76037.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [8] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; BT002434; AAO00794.1; -; mRNA.
DR EMBL; BT006606; AAP31950.1; -; mRNA.
DR EMBL; CP002686; AEE76037.1; -; Genomic_DNA.
DR EMBL; AB026641; BAB01332.1; -; Genomic_DNA.
DR EMBL; AB020749; BAB01332.1; JOINED; Genomic_DNA.
DR RefSeq; NP_188431.3; NM_112685.4.
DR AlphaFoldDB; Q9LSK7; -.
DR SMR; Q9LSK7; -.
DR IntAct; Q9LSK7; 1.
DR STRING; 3702.Q9LSK7; -.
DR MetOSite; Q9LSK7; -.
DR PaxDb; 3702-AT3G18035-1; -.
DR ProteomicsDB; 181087; -.
DR EnsemblPlants; AT3G18035.1; AT3G18035.1; AT3G18035.
DR GeneID; 821328; -.
DR Gramene; AT3G18035.1; AT3G18035.1; AT3G18035.
DR Araport; AT3G18035; -.
DR TAIR; AT3G18035; HON4.
DR eggNOG; ENOG502S0IU; Eukaryota.
DR HOGENOM; CLU_031760_0_0_1; -.
DR OrthoDB; 694127at2759; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LSK7; baseline and differential.
DR GO; GO:0000786; C:nucleosome; IEA:InterPro.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006334; P:nucleosome assembly; IEA:InterPro.
DR CDD; cd00073; H15; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR017956; AT_hook_DNA-bd_motif.
DR InterPro; IPR005818; Histone_H1/H5_H15.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR11467:SF29; H15 DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR11467; HISTONE H1; 1.
DR Pfam; PF00538; Linker_histone; 1.
DR PRINTS; PR00929; ATHOOK.
DR SMART; SM00384; AT_hook; 6.
DR SMART; SM00526; H15; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS51504; H15; 1.
PE 1: Evidence at protein level;
KW DNA-binding {ECO:0000313|EMBL:AEE76037.1};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q9LSK7,
KW ECO:0007829|ProteomicsDB:Q9LSK7};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548}.
FT DOMAIN 64..133
FT /note="H15"
FT /evidence="ECO:0000259|PROSITE:PS51504"
FT REGION 1..38
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 158..308
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 351..375
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 426..480
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..18
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 158..172
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 197..226
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 438..454
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 480 AA; 51524 MW; 39E12B0383B74EC9 CRC64;
MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH
VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG LTSAHAALLT HHLKTLKTSG
VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG
RGRPPKPKPE SQPQPLQQLP PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR
KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG
RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG VTSENQAVVQ AIKDLEALTV
TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF
//
