ID Q9SGW6_ARATH Unreviewed; 124 AA.
AC Q9SGW6;
DT 01-MAY-2000, integrated into UniProtKB/TrEMBL.
DT 01-MAY-2000, sequence version 1.
DT 27-MAR-2024, entry version 137.
DE SubName: Full=At1g64490 {ECO:0000313|EMBL:ABD38913.1};
DE SubName: Full=DEK, chromatin associated protein {ECO:0000313|EMBL:AEE34246.1};
DE SubName: Full=F1N19.6 {ECO:0000313|EMBL:AAF19669.1};
GN OrderedLocusNames=At1g64490 {ECO:0000313|EMBL:AEE34246.1};
GN ORFNames=F1N19.6 {ECO:0000313|EMBL:AEE34246.1}, F1N19_6
GN {ECO:0000313|EMBL:AEE34246.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AAF19669.1};
RN [1] {ECO:0000313|EMBL:AAF19669.1}
RP NUCLEOTIDE SEQUENCE.
RA Chao Q., Brooks S., Buehler E., Johnson-Hopson C., Khan S., Kim C.,
RA Shinn P., Tambunga G., Altafi H., Bei Q., Chin C., Chiou J., Choi E.,
RA Conn L., Conway A., Gonzales A., Hansen N., Howng B., Koo T., Lam B.,
RA Lee J., Lenz C., Li J., Liu A., Liu K., Liu S., Mukharsky N., Nguyen M.,
RA Palm C., Pham P., Sakano H., Schwartz J., Southwick A., Thaveri A.,
RA Toriumi M., Vaysberg M., Yu G., Federspiel N.A., Theologis A., Ecker J.R.;
RT "Genomic sequence for Arabidopsis thaliana BAC F1N19 from chromosome I.";
RL Submitted (OCT-1999) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:AEE34246.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3] {ECO:0000313|EMBL:AAF19669.1}
RP NUCLEOTIDE SEQUENCE.
RA Cheuk R., Shinn P., Brooks S., Buehler E., Chao Q., Johnson-Hopson C.,
RA Khan S., Kim C., Altafi H., Bei B., Chin C., Chiou J., Choi E., Conn L.,
RA Conway A., Gonzalez A., Hansen N., Howing B., Koo T., Lam B., Lee J.,
RA Lenz C., Li J., Liu A., Liu J., Liu S., Mukharsky N., Nguyen M., Palm C.,
RA Pham P., Sakano H., Schwartz J., Southwick A., Thaveri A., Toriumi M.,
RA Vaysberg M., Yu G., Davis R., Federspiel N., Theologis A., Ecker J.;
RL Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AAF19669.1}
RP NUCLEOTIDE SEQUENCE.
RA Chao Q., Brooks S., Buehler E., Johnson-Hopson C., Khan S., Kim C.,
RA Shinn P., Altafi H., Bei B., Chin C., Chiou J., Choi E., Conn L.,
RA Conway A., Gonzalez A., Hansen N., Howing B., Koo T., Lam B., Lee J.,
RA Lenz C., Li J., Liu A., Liu J., Liu S., Mukharsky N., Nguyen M., Palm C.,
RA Pham P., Sakano H., Schwartz J., Southwick A., Thaveri A., Toriumi M.,
RA Vaysberg M., Yu G., Davis R., Federspiel N., Theologis A., Ecker J.;
RL Submitted (OCT-2000) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:AAM61420.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=12093376;
RA Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT "Full-length messenger RNA sequences greatly improve genome annotation.";
RL Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002).
RN [6] {ECO:0000313|EMBL:AAM61420.1}
RP NUCLEOTIDE SEQUENCE.
RA Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [7] {ECO:0000313|EMBL:BAD43508.1}
RP NUCLEOTIDE SEQUENCE.
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [8] {ECO:0000313|EMBL:AAM61420.1}
RP NUCLEOTIDE SEQUENCE.
RA Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT "Features of Arabidopsis genes and genome discovered using full-length
RT cDNAs.";
RL Plant Mol. Biol. 60:71-87(2006).
RN [9] {ECO:0000313|EMBL:ABD38913.1}
RP NUCLEOTIDE SEQUENCE.
RA Shinn P., Chen H., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases.
RN [10] {ECO:0000313|EMBL:AEE34246.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [11] {ECO:0000313|EMBL:AEE34246.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [12] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; AC009519; AAF19669.1; -; Genomic_DNA.
DR EMBL; AY084856; AAM61420.1; -; mRNA.
DR EMBL; BT024574; ABD38913.1; -; mRNA.
DR EMBL; CP002684; AEE34246.1; -; Genomic_DNA.
DR EMBL; AK175745; BAD43508.1; -; mRNA.
DR RefSeq; NP_564835.1; NM_105124.2.
DR AlphaFoldDB; Q9SGW6; -.
DR SMR; Q9SGW6; -.
DR STRING; 3702.Q9SGW6; -.
DR PaxDb; 3702-AT1G64490-1; -.
DR ProteomicsDB; 187832; -.
DR EnsemblPlants; AT1G64490.1; AT1G64490.1; AT1G64490.
DR GeneID; 842757; -.
DR Gramene; AT1G64490.1; AT1G64490.1; AT1G64490.
DR KEGG; ath:AT1G64490; -.
DR TAIR; AT1G64490; -.
DR eggNOG; ENOG502SYFX; Eukaryota.
DR HOGENOM; CLU_2112296_0_0_1; -.
DR OMA; HTQIVDD; -.
DR OrthoDB; 693385at2759; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SGW6; baseline and differential.
DR InterPro; IPR014876; DEK_C.
DR Pfam; PF08766; DEK_C; 1.
DR PROSITE; PS51998; DEK_C; 1.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q9SGW6,
KW ECO:0007829|ProteomicsDB:Q9SGW6};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548}.
FT DOMAIN 13..70
FT /note="DEK-C"
FT /evidence="ECO:0000259|PROSITE:PS51998"
FT REGION 93..124
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 124 AA; 14188 MW; 08DAB2EC13FE3D2A CRC64;
MEEEEARQVV IDNDLKKKIK ETVKKILKRS SLLEITEIKA REEASSELNL DLSRDPYKII
VREAVDSFIE KAIMTIDTEM GKLHTQIVED VDGEVTENAT KTTTKKKKKK KAKKKVEEEE
SSPA
//
