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Database: UniProt
Entry: Q9SSW1
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Original site: Q9SSW1 
ID   AZF1_ARATH              Reviewed;         245 AA.
AC   Q9SSW1;
DT   06-MAR-2013, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-2000, sequence version 1.
DT   27-MAR-2024, entry version 142.
DE   RecName: Full=Zinc finger protein AZF1;
DE   AltName: Full=Zinc finger protein OZAKGYO;
DE   AltName: Full=Zinc-finger protein 1;
GN   Name=AZF1; Synonyms=ZF1; OrderedLocusNames=At5g67450; ORFNames=K8K14.19;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA], TISSUE SPECIFICITY, AND INDUCTION.
RC   STRAIN=cv. Columbia;
RX   PubMed=10806347; DOI=10.1016/s0378-1119(00)00133-5;
RA   Sakamoto H., Araki T., Meshi T., Iwabuchi M.;
RT   "Expression of a subset of the Arabidopsis Cys(2)/His(2)-type zinc-finger
RT   protein gene family under water stress.";
RL   Gene 248:23-32(2000).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA   Kim S., Choi Y., Jeong C.-W., Choi E.K., Chang M.-S., Lee I., Fischer R.L.,
RA   Choi Y.D., Lee J.S.;
RT   "Zinc finger protein OZAKGYO.";
RL   Submitted (JUN-2002) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9501997; DOI=10.1093/dnares/4.6.401;
RA   Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence
RT   features of the regions of 1,191,918 bp covered by seventeen physically
RT   assigned P1 clones.";
RL   DNA Res. 4:401-414(1997).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL   Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN   [7]
RP   FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION.
RX   PubMed=15333755; DOI=10.1104/pp.104.046599;
RA   Sakamoto H., Maruyama K., Sakuma Y., Meshi T., Iwabuchi M., Shinozaki K.,
RA   Yamaguchi-Shinozaki K.;
RT   "Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription
RT   repressors under drought, cold, and high-salinity stress conditions.";
RL   Plant Physiol. 136:2734-2746(2004).
RN   [8]
RP   FUNCTION, SUBCELLULAR LOCATION, AND INDUCTION.
RX   PubMed=21852415; DOI=10.1104/pp.111.182683;
RA   Kodaira K.S., Qin F., Tran L.S., Maruyama K., Kidokoro S., Fujita Y.,
RA   Shinozaki K., Yamaguchi-Shinozaki K.;
RT   "Arabidopsis Cys2/His2 zinc-finger proteins AZF1 and AZF2 negatively
RT   regulate abscisic acid-repressive and auxin-inducible genes under abiotic
RT   stress conditions.";
RL   Plant Physiol. 157:742-756(2011).
CC   -!- FUNCTION: Transcriptional repressor involved in the inhibition of plant
CC       growth under abiotic stress conditions. Can repress the expression of
CC       various genes, including osmotic stress and abscisic acid-repressive
CC       genes and auxin-inducible genes, by binding to their promoter regions
CC       in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755,
CC       ECO:0000269|PubMed:21852415}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:15333755,
CC       ECO:0000269|PubMed:21852415}.
CC   -!- TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in
CC       leaves and stems. {ECO:0000269|PubMed:10806347,
CC       ECO:0000269|PubMed:15333755}.
CC   -!- INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and
CC       cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755,
CC       ECO:0000269|PubMed:21852415}.
CC   -!- MISCELLANEOUS: Plants overexpressing AZF1 have increased sensitivity to
CC       salt stress and barely survive under high salt conditions.
CC       {ECO:0000305|PubMed:21852415}.
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DR   EMBL; AB030731; BAA85108.1; -; Genomic_DNA.
DR   EMBL; AY123328; AAM78034.1; -; Genomic_DNA.
DR   EMBL; AB007645; BAB09030.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED98346.1; -; Genomic_DNA.
DR   EMBL; BT003064; AAO23629.1; -; mRNA.
DR   EMBL; AK227608; BAE99599.1; -; mRNA.
DR   RefSeq; NP_201546.1; NM_126145.3.
DR   AlphaFoldDB; Q9SSW1; -.
DR   BioGRID; 22123; 1.
DR   IntAct; Q9SSW1; 1.
DR   STRING; 3702.Q9SSW1; -.
DR   PaxDb; 3702-AT5G67450-1; -.
DR   EnsemblPlants; AT5G67450.1; AT5G67450.1; AT5G67450.
DR   GeneID; 836881; -.
DR   Gramene; AT5G67450.1; AT5G67450.1; AT5G67450.
DR   KEGG; ath:AT5G67450; -.
DR   Araport; AT5G67450; -.
DR   TAIR; AT5G67450; ZF1.
DR   eggNOG; KOG1721; Eukaryota.
DR   HOGENOM; CLU_059471_1_2_1; -.
DR   InParanoid; Q9SSW1; -.
DR   OMA; KMWDDEE; -.
DR   OrthoDB; 4569288at2759; -.
DR   PhylomeDB; Q9SSW1; -.
DR   PRO; PR:Q9SSW1; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9SSW1; baseline and differential.
DR   Genevisible; Q9SSW1; AT.
DR   GO; GO:0005634; C:nucleus; IDA:TAIR.
DR   GO; GO:0003677; F:DNA binding; ISS:TAIR.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IDA:TAIR.
DR   GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:UniProtKB-KW.
DR   GO; GO:0042538; P:hyperosmotic salinity response; IEP:TAIR.
DR   GO; GO:0045892; P:negative regulation of DNA-templated transcription; IDA:TAIR.
DR   GO; GO:0009409; P:response to cold; IEP:TAIR.
DR   Gene3D; 3.30.160.60; Classic Zinc Finger; 1.
DR   InterPro; IPR044653; AZF1/2/3-like.
DR   InterPro; IPR036236; Znf_C2H2_sf.
DR   InterPro; IPR013087; Znf_C2H2_type.
DR   PANTHER; PTHR45988; C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED; 1.
DR   PANTHER; PTHR45988:SF37; ZINC FINGER PROTEIN AZF1; 1.
DR   Pfam; PF13912; zf-C2H2_6; 2.
DR   SMART; SM00355; ZnF_C2H2; 2.
DR   SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 1.
DR   PROSITE; PS00028; ZINC_FINGER_C2H2_1; 2.
DR   PROSITE; PS50157; ZINC_FINGER_C2H2_2; 2.
PE   2: Evidence at transcript level;
KW   Abscisic acid signaling pathway; DNA-binding; Metal-binding; Nucleus;
KW   Reference proteome; Repeat; Repressor; Transcription;
KW   Transcription regulation; Zinc; Zinc-finger.
FT   CHAIN           1..245
FT                   /note="Zinc finger protein AZF1"
FT                   /id="PRO_0000421826"
FT   ZN_FING         97..119
FT                   /note="C2H2-type 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT   ZN_FING         164..186
FT                   /note="C2H2-type 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT   REGION          1..57
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          112..141
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          193..231
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..15
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        19..35
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        193..207
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   245 AA;  26471 MW;  A342B6B68FBE64E3 CRC64;
     MALETLNSPT ATTTARPLLR YREEMEPENL EQWAKRKRTK RQRFDHGHQN QETNKNLPSE
     EEYLALCLLM LARGSAVQSP PLPPLPSRAS PSDHRDYKCT VCGKSFSSYQ ALGGHKTSHR
     KPTNTSITSG NQELSNNSHS NSGSVVINVT VNTGNGVSQS GKIHTCSICF KSFASGQALG
     GHKRCHYDGG NNGNGNGSSS NSVELVAGSD VSDVDNERWS EESAIGGHRG FDLNLPADQV
     SVTTS
//
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