ID Q9ZC48_YERPE Unreviewed; 256 AA.
AC Q9ZC48; A0A1U8QSB1; A0A380PDE1; Q74UN0; Q7CI57;
DT 01-MAY-1999, integrated into UniProtKB/TrEMBL.
DT 01-MAY-1999, sequence version 1.
DT 27-MAR-2024, entry version 169.
DE SubName: Full=ORF40 {ECO:0000313|EMBL:CAA21363.1};
DE SubName: Full=Probable deoR-family transcriptional regulatory protein {ECO:0000313|EMBL:CAL20576.1};
GN OrderedLocusNames=YPO1938 {ECO:0000313|EMBL:CAL20576.1};
OS Yersinia pestis.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
OC Yersiniaceae; Yersinia.
OX NCBI_TaxID=632 {ECO:0000313|EMBL:CAA21363.1};
RN [1] {ECO:0000313|EMBL:CAA21363.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=6/69 {ECO:0000313|EMBL:CAA21363.1};
RA Buchrieser C., Rusniok C., Couve E., Frangeul L., Billault A., Kunst F.,
RA Carniel E., Glaser P.;
RT "DNA sequence of the 102 kbases unstable region of Yersinia pestis.";
RL Submitted (OCT-1998) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:CAL20576.1, ECO:0000313|Proteomes:UP000000815}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CO-92 / Biovar Orientalis {ECO:0000313|Proteomes:UP000000815},
RC and CO92 {ECO:0000313|EMBL:CAL20576.1};
RX PubMed=11586360; DOI=10.1038/35097083;
RA Parkhill J., Wren B.W., Thomson N.R., Titball R.W., Holden M.T.G.,
RA Prentice M.B., Sebaihia M., James K.D., Churcher C., Mungall K.L.,
RA Baker S., Basham D., Bentley S.D., Brooks K., Cerdeno-Tarraga A.M.,
RA Chillingworth T., Cronin A., Davies R.M., Davis P., Dougan G., Feltwell T.,
RA Hamlin N., Holroyd S., Jagels K., Leather S., Karlyshev A.V., Moule S.,
RA Oyston P.C.F., Quail M., Rutherford K., Simmonds M., Skelton J.,
RA Stevens K., Whitehead S., Barrell B.G.;
RT "Genome sequence of Yersinia pestis, the causative agent of plague.";
RL Nature 413:523-527(2001).
RN [3] {ECO:0000313|EMBL:CAL20576.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=CO92 {ECO:0000313|EMBL:CAL20576.1};
RX PubMed=12834539; DOI=10.1186/1471-2180-3-13;
RA Delihas N.;
RT "Annotation and evolutionary relationships of a small regulatory RNA gene
RT micF and its target ompF in Yersinia species.";
RL BMC Microbiol. 3:13-13(2003).
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DR EMBL; AL031866; CAA21363.1; -; Genomic_DNA.
DR EMBL; AL590842; CAL20576.1; -; Genomic_DNA.
DR PIR; AE0236; AE0236.
DR PIR; T47020; T47020.
DR RefSeq; WP_002212058.1; NZ_WHLN01000038.1.
DR RefSeq; YP_002346927.1; NC_003143.1.
DR STRING; 214092.YPO1938; -.
DR PaxDb; 214092-YPO1938; -.
DR DNASU; 1147320; -.
DR GeneID; 66841633; -.
DR KEGG; ype:YPO1938; -.
DR KEGG; ypl:CH46_3177; -.
DR KEGG; ypv:BZ15_1604; -.
DR KEGG; ypw:CH59_3734; -.
DR PATRIC; fig|214092.21.peg.2313; -.
DR eggNOG; COG1349; Bacteria.
DR HOGENOM; CLU_060699_0_1_6; -.
DR OMA; RPQFKIV; -.
DR OrthoDB; 5685843at2; -.
DR Proteomes; UP000000815; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR Gene3D; 3.40.50.1360; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR014036; DeoR_C.
DR InterPro; IPR001034; DeoR_HTH.
DR InterPro; IPR037171; NagB/RpiA_transferase-like.
DR InterPro; IPR018356; Tscrpt_reg_HTH_DeoR_CS.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR NCBIfam; NF040890; trans_reg_YgbI; 1.
DR PANTHER; PTHR30363; HTH-TYPE TRANSCRIPTIONAL REGULATOR SRLR-RELATED; 1.
DR PANTHER; PTHR30363:SF58; REGULATORY PROTEIN, DEOR FAMILY-RELATED; 1.
DR Pfam; PF00455; DeoRC; 1.
DR Pfam; PF08220; HTH_DeoR; 1.
DR PRINTS; PR00037; HTHLACR.
DR SMART; SM01134; DeoRC; 1.
DR SMART; SM00420; HTH_DEOR; 1.
DR SUPFAM; SSF100950; NagB/RpiA/CoA transferase-like; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS00894; HTH_DEOR_1; 1.
DR PROSITE; PS51000; HTH_DEOR_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000000815};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 3..58
FT /note="HTH deoR-type"
FT /evidence="ECO:0000259|PROSITE:PS51000"
SQ SEQUENCE 256 AA; 27912 MW; 3CD1342E2E690F1D CRC64;
MIPIERHQKI LALVAERGVV SIAELTERLG VSHMTIRRDV QKLEEQGAVL SVSGGVRSTQ
RLAIEPSHQD KTMMFSRQKQ AIGTSAALHI PRNSCIYLDA GTTTLALARQ LEDRDDLLVV
TNDFVIANFL IESSQCRMIH SGGTLCRKNR SCIGEAAAHS LRNLSIDIAF ISASCWGLRG
ISTPDEDKVP VKRAISEASS KRVLLADASK YGKVATYLAL PLTAFDVVIT DNSLSSTVYE
ELAEKALELI IASPPR
//