ID R0FS12_9BRAS Unreviewed; 299 AA.
AC R0FS12;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE RecName: Full=Reverse transcriptase zinc-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
DE Flags: Fragment;
GN ORFNames=CARUB_v10018434mg {ECO:0000313|EMBL:EOA25126.1};
OS Capsella rubella.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA25126.1, ECO:0000313|Proteomes:UP000029121};
RN [1] {ECO:0000313|Proteomes:UP000029121}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX PubMed=23749190; DOI=10.1038/ng.2669;
RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT "The Capsella rubella genome and the genomic consequences of rapid mating
RT system evolution.";
RL Nat. Genet. 45:831-835(2013).
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DR EMBL; KB870809; EOA25126.1; -; Genomic_DNA.
DR RefSeq; XP_006292228.1; XM_006292166.1.
DR AlphaFoldDB; R0FS12; -.
DR STRING; 81985.R0FS12; -.
DR eggNOG; KOG1075; Eukaryota.
DR Proteomes; UP000029121; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR47074; BNAC02G40300D PROTEIN; 1.
DR PANTHER; PTHR47074:SF68; GB|AAF30348.1-RELATED; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000029121}.
FT DOMAIN 1..52
FT /note="Reverse transcriptase zinc-binding"
FT /evidence="ECO:0000259|Pfam:PF13966"
FT DOMAIN 164..271
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|Pfam:PF13456"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:EOA25126.1"
SQ SEQUENCE 299 AA; 34919 MW; 6506169E9DE82334 CRC64;
HFLWRLLSGA LPTGATMKAR HINQFFVCRR CCSTDESIEH LFFGCTYAQA VWRGSGIPVN
RILDPTISVE DKIQIFFTMN ADQNHRHFPI WILWRLWKCR NMLLYQCKFF DWNYCLRQAK
RDAIEWYDVL IKVDSLHMHP RQHDRLLNTH SKWHRPDQGW IKCNYDGSYI NATVKAKAGW
IFRTTTGVYD GSGHGIGLCT SSALESELQA VCLALQHASI KEVVSILQGL SQNFAVLNWI
REVKNWSRHF DNIKYSWISR RGNSCADILA KAPLPNDLSV YYYSYVPHFL IQPLYNDNI
//
