ID R0HK35_9BRAS Unreviewed; 667 AA.
AC R0HK35;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE RecName: Full=BED-type domain-containing protein {ECO:0000259|PROSITE:PS50808};
GN ORFNames=CARUB_v10013145mg {ECO:0000313|EMBL:EOA30039.1};
OS Capsella rubella.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA30039.1, ECO:0000313|Proteomes:UP000029121};
RN [1] {ECO:0000313|Proteomes:UP000029121}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX PubMed=23749190; DOI=10.1038/ng.2669;
RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT "The Capsella rubella genome and the genomic consequences of rapid mating
RT system evolution.";
RL Nat. Genet. 45:831-835(2013).
RN [2] {ECO:0000313|EMBL:EOA30039.1}
RP NUCLEOTIDE SEQUENCE.
RA Schmutz J., Prochnik S., Nordborg M., Weigel D., Rokhsar D., Wright S.;
RT "Genome sequencing of Capsella rubella.";
RL Nat. Genet. 0:0-0(2013).
CC -!- SUBUNIT: Homodimer. {ECO:0000256|ARBA:ARBA00011738}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; KB870807; EOA30039.1; -; Genomic_DNA.
DR EMBL; KB870807; EOA30040.1; -; Genomic_DNA.
DR RefSeq; XP_006297141.1; XM_006297079.1.
DR RefSeq; XP_006297142.1; XM_006297080.1.
DR AlphaFoldDB; R0HK35; -.
DR STRING; 81985.R0HK35; -.
DR GeneID; 17893067; -.
DR KEGG; crb:17893067; -.
DR eggNOG; KOG1121; Eukaryota.
DR OrthoDB; 539174at2759; -.
DR Proteomes; UP000029121; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; IEA:UniProt.
DR InterPro; IPR045259; DAYSLEEPER-like.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR23272; BED FINGER-RELATED; 1.
DR PANTHER; PTHR23272:SF161; BED-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF14372; hAT-like_RNase-H; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SMART; SM00614; ZnF_BED; 1.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000029121};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00027}.
FT DOMAIN 14..67
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
SQ SEQUENCE 667 AA; 76667 MW; C2DA542D757A00A2 CRC64;
MDESNEIILQ KSKRLTSVVW NYFERVRKAD VCYAVCIQCN KKLSGSSNSG TTHLRNHLMR
CLKRTNHDMS QLLTPKRRKK ENPVTVATIS FDEGQPKDEY LRPKFDQEQR RDEVVLSRGS
GGRFSQERSQ VDLARMIIMH GYPLAMVDHV GFKVFARNLQ PLFEAVPNST IEDSCMEIYM
REKQRVQHTL NNLYGKINLS VEMWSSRDNA NYVCLASHYI DEEWRLHRNV LNFITLDPSH
TEDMLSEVII RCLIEWRLES KLFAVTFDSF SVNEEIVLRI KDHMSQSSQI LINGQLFELK
SAAHLLNSLV QDCLEAMRDV IQKIRGSVRY VKSSQSAQVR FNEIAQLAGI NSHKILVLDS
LVNSNSTYVM LETVLEYKGA FCHLRDHDHG FDSSLTDEEW EWTRYVTGYL KLVFDIASDF
SGNKCPTANV YFPEMCDIHI QLIEWCKNQD NFLSSLAASM KAKFDEYWNK CSLVLAIAAI
LDPRYKMKLV EYYYSKIYGS TALDRIKEVS NGVKELLDAY SMCSAIVGED SSFSGSGLGR
AMDTRDRLKG FDKFLHETSQ NQNTTSDLDK YLSEPNFPRS GEFNILNYWK VHTPRYPILS
MMARDILGTP ISIIAPDSTF NSGTPMIADS QSSLNPDIRQ ALFCAHDWLS TETEEMLPLS
RQYPQTL
//
