ID   R0HQS5_9BRAS            Unreviewed;       581 AA.
AC   R0HQS5;
DT   26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT   26-JUN-2013, sequence version 1.
DT   27-MAR-2024, entry version 29.
DE   RecName: Full=Ty3 transposon capsid-like protein domain-containing protein {ECO:0000259|Pfam:PF19259};
DE   Flags: Fragment;
GN   ORFNames=CARUB_v10015385mg {ECO:0000313|EMBL:EOA32134.1};
OS   Capsella rubella.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX   NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA32134.1, ECO:0000313|Proteomes:UP000029121};
RN   [1] {ECO:0000313|Proteomes:UP000029121}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX   PubMed=23749190; DOI=10.1038/ng.2669;
RA   Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA   Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA   Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA   Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA   Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA   Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT   "The Capsella rubella genome and the genomic consequences of rapid mating
RT   system evolution.";
RL   Nat. Genet. 45:831-835(2013).
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DR   EMBL; KB870807; EOA32134.1; -; Genomic_DNA.
DR   RefSeq; XP_006299236.1; XM_006299174.1.
DR   AlphaFoldDB; R0HQS5; -.
DR   STRING; 81985.R0HQS5; -.
DR   eggNOG; KOG0017; Eukaryota.
DR   Proteomes; UP000029121; Unassembled WGS sequence.
DR   GO; GO:0043227; C:membrane-bounded organelle; IEA:UniProt.
DR   CDD; cd00303; retropepsin_like; 1.
DR   Gene3D; 2.40.70.10; Acid Proteases; 1.
DR   InterPro; IPR032567; LDOC1-rel.
DR   InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR   InterPro; IPR045358; Ty3_capsid.
DR   PANTHER; PTHR15503:SF22; CCHC-TYPE DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR   PANTHER; PTHR15503; LDOC1 RELATED; 1.
DR   Pfam; PF08284; RVP_2; 1.
DR   Pfam; PF19259; Ty3_capsid; 1.
DR   SUPFAM; SSF50630; Acid proteases; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000029121}.
FT   DOMAIN          102..230
FT                   /note="Ty3 transposon capsid-like protein"
FT                   /evidence="ECO:0000259|Pfam:PF19259"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:EOA32134.1"
FT   NON_TER         581
FT                   /evidence="ECO:0000313|EMBL:EOA32134.1"
SQ   SEQUENCE   581 AA;  65029 MW;  C1DEC29BD7698930 CRC64;
     TAYYTRSVAR AEAHNILVSE PGIGHRRTDG GGDWPVRPIG DVTYSNFLSG DCRVQSEIGD
     REDECREEHN GGFALPPARV EFPSYDGTTN AVEWLQRCED YFEDQRIYHD DARVRQATFV
     LTGQAYHWNT NLRRLVTHKL SWIEFKKICK SRFGKADAVN PVGELCNLRH TGTVDEYCNQ
     FEECLGRQTR LSGAQQLWQF CAGLTDNLRK EVEYLRPETI FEAMEYARDN EYKIAGDRRV
     RTFGGHSAPT LRYSPLLSKP GLIGSQEQQL EKGREYPLHK TNPPKQVRKK LTLAEMAERK
     AKGLCFNCDE SYAPGHKCQP VLFHIELVQD GEDQEDEPFE EGDLELSLNA MKGEQTESTF
     QVNAAIAGET GWILLDTGST HNFIKSSVAA KLGIPMIRKP GRVVALADGG KCPVDGLCKG
     LVMEVQGHQF ETDCFAIPLS GFNVVLGIRW LNALGRVIWD GPARTIEFVR GDTLIKWHGE
     ADVREDKGAA LNTIGNNNTL ERWIEDEEEI FTTIGETETE TAFQKAATEI VLNVLTTTAT
     PMCLDGLVAK FSELFAKPTG LPPQRSFDHK IRLLGGVDPV A
//