ID R0HWP9_9BRAS Unreviewed; 840 AA.
AC R0HWP9;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CARUB_v10012971mg {ECO:0000313|EMBL:EOA29875.1};
OS Capsella rubella.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA29875.1, ECO:0000313|Proteomes:UP000029121};
RN [1] {ECO:0000313|Proteomes:UP000029121}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX PubMed=23749190; DOI=10.1038/ng.2669;
RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT "The Capsella rubella genome and the genomic consequences of rapid mating
RT system evolution.";
RL Nat. Genet. 45:831-835(2013).
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; KB870807; EOA29875.1; -; Genomic_DNA.
DR RefSeq; XP_006296977.1; XM_006296915.1.
DR AlphaFoldDB; R0HWP9; -.
DR STRING; 81985.R0HWP9; -.
DR GeneID; 17890639; -.
DR KEGG; crb:17890639; -.
DR eggNOG; KOG1081; Eukaryota.
DR eggNOG; KOG1862; Eukaryota.
DR eggNOG; KOG1946; Eukaryota.
DR OrthoDB; 50760at2759; -.
DR Proteomes; UP000029121; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd00072; GYF; 1.
DR CDD; cd15568; PHD5_NSD; 1.
DR CDD; cd10567; SWIB-MDM2_like; 1.
DR Gene3D; 3.30.1490.40; -; 1.
DR Gene3D; 1.10.245.10; SWIB/MDM2 domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR003169; GYF.
DR InterPro; IPR035445; GYF-like_dom_sf.
DR InterPro; IPR036885; SWIB_MDM2_dom_sf.
DR InterPro; IPR003121; SWIB_MDM2_domain.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46695:SF17; PHD FINGER FAMILY PROTEIN _ SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN _ GYF DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR46695; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED; 1.
DR Pfam; PF02213; GYF; 1.
DR Pfam; PF02201; SWIB; 1.
DR SMART; SM00444; GYF; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF55277; GYF domain; 1.
DR SUPFAM; SSF47592; SWIB/MDM2 domain; 1.
DR PROSITE; PS50829; GYF; 1.
DR PROSITE; PS51925; SWIB_MDM2; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000029121};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 86..152
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 296..376
FT /note="DM2"
FT /evidence="ECO:0000259|PROSITE:PS51925"
FT DOMAIN 469..523
FT /note="GYF"
FT /evidence="ECO:0000259|PROSITE:PS50829"
FT REGION 35..79
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 231..258
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 802..840
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 244..258
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 817..840
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 840 AA; 93441 MW; 3EE21384AEA1D182 CRC64;
MPEIDLMRVD QCLSDVVKPP PGFFDCGLTV DADSKLDEEV EEEEEDSDSL KKSVGRSTRR
GRPPRTSGAS SKASSPQVSR KRREDEDVCF VCFDGGSLVL CDRRGCPKAY HPACVKRTEA
FFRSRAKWNC GWHICTACQK DSFYMCYTCP YSVCKRCVRS SEYVVVRENK GFCGICMKTI
MLIENAAEAN KEKVQVDFDD QGSWEYLFKI YWVSLKEKLS LSLDDLTKAR NPWKSSSSTV
PKRRTNSRVH EKGDGNSPGV IKVRRAKVRK TDSVSVSKLG PSLDSNSSLG DRLPPLTSAT
AWATDELLDF VRFMKHGDIS VLSKYDVQTL VLEHVRRNNL QTSPQIMCDA RLMRLFGKER
VDHFEMLKLL DSHFLDQERF PVTDTSAGGV TETMSFQVDA SRGCDRLNTS EQYQDRFSAS
KQHQGESQQL NMHNCHVRPS SSNSRNHAVV KPETCAPVSY KPIDSLDTNM VWLYGDPDGK
IHGPFSLYNL RQWNSSGHFP PELRIWRLGE QQNSSILLTD ALNGQFHKTG LLQNHSIPKQ
EVTANIANDQ HRSVAVPKLE SRILDFSPNS VCTDQSVISS SNSVITRSSD VSNKSGNNFS
RNMLPLDFSL SNERDNVGSV SLWNKRKVES PLLVQSPISC SLSLSTLPGN SNCSMPPHER
WNAGQTDPNG NNAAMNACNQ NSSLSGSAEK QVTATVQSCG QNWNAATPSS ASNVWDSNTG
LASFPDNQEI DFLDLFSPTF KFNFASTSTE WQPIVAGPDE CDESVSDLLA EVEAMESQKR
LPSPTSTFRG PEELVIRHSI NDSFSPAEGH SPALDVSKGD SMSSTNDLQM HSRSNSAVHF
//
