ID R0IH84_9BRAS Unreviewed; 679 AA.
AC R0IH84;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE RecName: Full=BED-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CARUB_v10012565mg {ECO:0000313|EMBL:EOA37750.1};
OS Capsella rubella.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA37750.1, ECO:0000313|Proteomes:UP000029121};
RN [1] {ECO:0000313|Proteomes:UP000029121}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX PubMed=23749190; DOI=10.1038/ng.2669;
RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT "The Capsella rubella genome and the genomic consequences of rapid mating
RT system evolution.";
RL Nat. Genet. 45:831-835(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; KB870805; EOA37750.1; -; Genomic_DNA.
DR RefSeq; XP_006304852.1; XM_006304790.1.
DR AlphaFoldDB; R0IH84; -.
DR eggNOG; KOG1121; Eukaryota.
DR Proteomes; UP000029121; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR PANTHER; PTHR46481:SF4; ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 39; 1.
DR PANTHER; PTHR46481; ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SMART; SM00614; ZnF_BED; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000029121};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 62..104
FT /note="BED-type"
FT /evidence="ECO:0000259|Pfam:PF02892"
FT DOMAIN 560..646
FT /note="HAT C-terminal dimerisation"
FT /evidence="ECO:0000259|Pfam:PF05699"
SQ SEQUENCE 679 AA; 78116 MW; 3CBE0E912CCCE620 CRC64;
MNHEADQNHE EEQDINCTGQ QAAVTTKVLE TPDCSGKRKD IPESSVANAK PAKEFKVILS
RSPVWDHFTR NKEDRNKCIC HYYKKEYCRK YKSGTSNLTM HMATCNQYQA YKENKSQQVI
KGNGTVQSGK ISEPLFREAT NEMLVLGELP LSFVDNVAWR HFSSHANLYR PHTKRTASRD
IVHIASYLVI TTHFIDAFWL LKKLIIGFKY VSNHKASTIA TTLLDCLAEW GIQKVFAIIV
DIATTNTLAL KMFHRELSLV SNEAFFFDGD YMHVRCSAHI INLIVRDGLQ ELGKNVKAIR
NGVSYVRSSH VRQKSFKLRV DSGKLKRGSL TLDVKTIWNS TYTMLTNAVK YKFSFVKMLL
EDRLFHDYFQ ELDNGNRRVG PPESTEWNAI ERLVKFLVIF YNSTLVVSAS TNLHAHKCYG
EIVTIERNHS FLSSSPDDEL KNKADEMLKK FVKYWDGMKN NNKMLIIATI CFEKLYGEDT
IDSIAMLDSV FYVLDSMYKE YAALYSPRNC ASSQTTRAKQ HHSTQIREKM DLVDDLGYKR
MDMAYKEMVA DKADEEVRRE LKIYLTYPVE NPKLIRGTEL DVLSWWRVNS FKYPVLAEMV
KDVLAMQVSS VASESAFSTS GRILDPHRSC LTHYMIEVLM CTEQWMRQDI KSGADPTVIT
SAQLLSEFEM FDQLEKGNL
//
