ID R0KZ98_ANAPL Unreviewed; 1114 AA.
AC R0KZ98;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 24-JAN-2024, entry version 39.
DE SubName: Full=PAB-dependent poly(A)-specific ribonuclease subunit 2 {ECO:0000313|EMBL:EOA93307.1};
DE Flags: Fragment;
GN ORFNames=Anapl_17652 {ECO:0000313|EMBL:EOA93307.1};
OS Anas platyrhynchos (Mallard) (Anas boschas).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae;
OC Anatinae; Anas.
OX NCBI_TaxID=8839 {ECO:0000313|EMBL:EOA93307.1, ECO:0000313|Proteomes:UP000296049};
RN [1] {ECO:0000313|Proteomes:UP000296049}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23749191; DOI=10.1038/ng.2657;
RA Huang Y., Li Y., Burt D.W., Chen H., Zhang Y., Qian W., Kim H., Gan S.,
RA Zhao Y., Li J., Yi K., Feng H., Zhu P., Li B., Liu Q., Fairley S.,
RA Magor K.E., Du Z., Hu X., Goodman L., Tafer H., Vignal A., Lee T.,
RA Kim K.W., Sheng Z., An Y., Searle S., Herrero J., Groenen M.A.,
RA Crooijmans R.P., Faraut T., Cai Q., Webster R.G., Aldridge J.R.,
RA Warren W.C., Bartschat S., Kehr S., Marz M., Stadler P.F., Smith J.,
RA Kraus R.H., Zhao Y., Ren L., Fei J., Morisson M., Kaiser P., Griffin D.K.,
RA Rao M., Pitel F., Wang J., Li N.;
RT "The duck genome and transcriptome provide insight into an avian influenza
RT virus reservoir species.";
RL Nat. Genet. 45:776-783(2013).
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DR EMBL; KB746970; EOA93307.1; -; Genomic_DNA.
DR AlphaFoldDB; R0KZ98; -.
DR Proteomes; UP000296049; Unassembled WGS sequence.
DR GO; GO:0031251; C:PAN complex; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IEA:InterPro.
DR CDD; cd06143; PAN2_exo; 1.
DR CDD; cd02672; Peptidase_C19P; 1.
DR Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR HAMAP; MF_03182; PAN2; 1.
DR InterPro; IPR013520; Exonuclease_RNaseT/DNA_pol3.
DR InterPro; IPR030843; PAN2.
DR InterPro; IPR048841; PAN2_N.
DR InterPro; IPR028881; PAN2_UCH_dom.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR028889; USP_dom.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR PANTHER; PTHR15728; DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2; 1.
DR PANTHER; PTHR15728:SF0; PAN2-PAN3 DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2; 1.
DR Pfam; PF20770; PAN2_N; 1.
DR Pfam; PF00929; RNase_T; 1.
DR Pfam; PF13423; UCH_1; 1.
DR SMART; SM00479; EXOIII; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS50235; USP_3; 1.
PE 3: Inferred from homology;
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022839};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Reference proteome {ECO:0000313|Proteomes:UP000296049}.
FT DOMAIN 517..913
FT /note="USP"
FT /evidence="ECO:0000259|PROSITE:PS50235"
FT NON_TER 1114
FT /evidence="ECO:0000313|EMBL:EOA93307.1"
SQ SEQUENCE 1114 AA; 125497 MW; E5D124452DD0BF1E CRC64;
MNFEGLDPSL AEYAPALHPA LDPVLDPHLN PSLLQNVELD AEGVPLEGIA VPDSVHIVEG
MYSELHTAVS EVGVPVSVSH FDLHEEMLWV GNHGGHATSF FGPTLERYSS FQVNSSDDIR
QIQSLENGIL FLTKTNLKYM SRGGLIIFDY LMDDSEDMHS LLLTDSSTLL VGGLQNHVVE
IDLNTVQETQ KYTVEVPGIT IMRQSNRFFF CGHTSGKVSL RDLRTFVVEH EFDAYSGSLS
DFDVHGNLLV TCGFSSRMNG LACDRFLKVY DLRMMRATTP LQVHIDPFFL RFIPTYTSRL
AIISQTGQCQ FCEPTGLANP ADIFHVNTVG PLIMTFDVSA SKQALAFGDS EGCVHLWADS
PEVTFNAYSR ETDFALPCMV DTLPHLDWNQ DLVPLSLIPV PLTSETLLSD WPAANSAPAP
RRAPPVDPEI LRTMKKVGFI GYAPNPRTKL RNQIPYRLKE ADNEFDSFNQ VPESPIGREE
EPHLYMVAKK YRKVTIKYSK LGLEDFDFKH YNKTLFAGLE PHIPNAYCNC MIQPVRCLVQ
NHLCQKEFCL GCELGLLFHM LDLSRGDPCQ GSNFLRAFRT IPEASALGLI LADSDEATGK
VNLGRLIQSW NRFILTQLHQ ETQEQEGPQA YRGAGSSSFG SSRDSVIGQL FSCEMENCSM
CRCGKETVRV SSTLLFTLSY PESTEKPVKD YEFAQILKRS ICLEQNTQAW CENCEKYQPT
VQTRNIRCLP DVLVINCEVN SSKEADFWKT QAEYAFQRAM MRRGGFEITK GKEISLGEWK
ELGNPDTGHS YPSVEELKNV WIPHAIKMSL TKNKELDVCN WSESDELSPS DDPDSVYVYD
LMATVVHILD SRTGGSLVGH IKVGETYHQR KEGVTHQQWY LFNDFLIEPV DKCEAVQFDM
SWKVPAILYY ARRNLNAKYN LVIKNPIEAS VLLAEASLAR KQRKCHATFI PLMLSEMPQA
GDLVGLDAEF VTLNEEEAEL RSDGTKSTIK PSQMSVARIT CVRGQGPNEG VPFIDDYIST
QEQVVDYLTQ YSGIKPGDLD AKISSKHLTT LKSTYLKLRF LIDVGVKFVG HGLQKDFRVI
NLMVPKDQVI DTVYLFHIPR KRMISLRFLA WYFL
//