GenomeNet

Database: UniProt
Entry: R0KZ98_ANAPL
LinkDB: R0KZ98_ANAPL
Original site: R0KZ98_ANAPL 
ID   R0KZ98_ANAPL            Unreviewed;      1114 AA.
AC   R0KZ98;
DT   26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT   26-JUN-2013, sequence version 1.
DT   24-JAN-2024, entry version 39.
DE   SubName: Full=PAB-dependent poly(A)-specific ribonuclease subunit 2 {ECO:0000313|EMBL:EOA93307.1};
DE   Flags: Fragment;
GN   ORFNames=Anapl_17652 {ECO:0000313|EMBL:EOA93307.1};
OS   Anas platyrhynchos (Mallard) (Anas boschas).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC   Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae;
OC   Anatinae; Anas.
OX   NCBI_TaxID=8839 {ECO:0000313|EMBL:EOA93307.1, ECO:0000313|Proteomes:UP000296049};
RN   [1] {ECO:0000313|Proteomes:UP000296049}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=23749191; DOI=10.1038/ng.2657;
RA   Huang Y., Li Y., Burt D.W., Chen H., Zhang Y., Qian W., Kim H., Gan S.,
RA   Zhao Y., Li J., Yi K., Feng H., Zhu P., Li B., Liu Q., Fairley S.,
RA   Magor K.E., Du Z., Hu X., Goodman L., Tafer H., Vignal A., Lee T.,
RA   Kim K.W., Sheng Z., An Y., Searle S., Herrero J., Groenen M.A.,
RA   Crooijmans R.P., Faraut T., Cai Q., Webster R.G., Aldridge J.R.,
RA   Warren W.C., Bartschat S., Kehr S., Marz M., Stadler P.F., Smith J.,
RA   Kraus R.H., Zhao Y., Ren L., Fei J., Morisson M., Kaiser P., Griffin D.K.,
RA   Rao M., Pitel F., Wang J., Li N.;
RT   "The duck genome and transcriptome provide insight into an avian influenza
RT   virus reservoir species.";
RL   Nat. Genet. 45:776-783(2013).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; KB746970; EOA93307.1; -; Genomic_DNA.
DR   AlphaFoldDB; R0KZ98; -.
DR   Proteomes; UP000296049; Unassembled WGS sequence.
DR   GO; GO:0031251; C:PAN complex; IEA:InterPro.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:InterPro.
DR   GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR   GO; GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IEA:InterPro.
DR   CDD; cd06143; PAN2_exo; 1.
DR   CDD; cd02672; Peptidase_C19P; 1.
DR   Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR   HAMAP; MF_03182; PAN2; 1.
DR   InterPro; IPR013520; Exonuclease_RNaseT/DNA_pol3.
DR   InterPro; IPR030843; PAN2.
DR   InterPro; IPR048841; PAN2_N.
DR   InterPro; IPR028881; PAN2_UCH_dom.
DR   InterPro; IPR038765; Papain-like_cys_pep_sf.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR028889; USP_dom.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   PANTHER; PTHR15728; DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2; 1.
DR   PANTHER; PTHR15728:SF0; PAN2-PAN3 DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2; 1.
DR   Pfam; PF20770; PAN2_N; 1.
DR   Pfam; PF00929; RNase_T; 1.
DR   Pfam; PF13423; UCH_1; 1.
DR   SMART; SM00479; EXOIII; 1.
DR   SUPFAM; SSF54001; Cysteine proteinases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS50235; USP_3; 1.
PE   3: Inferred from homology;
KW   Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022839};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW   Reference proteome {ECO:0000313|Proteomes:UP000296049}.
FT   DOMAIN          517..913
FT                   /note="USP"
FT                   /evidence="ECO:0000259|PROSITE:PS50235"
FT   NON_TER         1114
FT                   /evidence="ECO:0000313|EMBL:EOA93307.1"
SQ   SEQUENCE   1114 AA;  125497 MW;  E5D124452DD0BF1E CRC64;
     MNFEGLDPSL AEYAPALHPA LDPVLDPHLN PSLLQNVELD AEGVPLEGIA VPDSVHIVEG
     MYSELHTAVS EVGVPVSVSH FDLHEEMLWV GNHGGHATSF FGPTLERYSS FQVNSSDDIR
     QIQSLENGIL FLTKTNLKYM SRGGLIIFDY LMDDSEDMHS LLLTDSSTLL VGGLQNHVVE
     IDLNTVQETQ KYTVEVPGIT IMRQSNRFFF CGHTSGKVSL RDLRTFVVEH EFDAYSGSLS
     DFDVHGNLLV TCGFSSRMNG LACDRFLKVY DLRMMRATTP LQVHIDPFFL RFIPTYTSRL
     AIISQTGQCQ FCEPTGLANP ADIFHVNTVG PLIMTFDVSA SKQALAFGDS EGCVHLWADS
     PEVTFNAYSR ETDFALPCMV DTLPHLDWNQ DLVPLSLIPV PLTSETLLSD WPAANSAPAP
     RRAPPVDPEI LRTMKKVGFI GYAPNPRTKL RNQIPYRLKE ADNEFDSFNQ VPESPIGREE
     EPHLYMVAKK YRKVTIKYSK LGLEDFDFKH YNKTLFAGLE PHIPNAYCNC MIQPVRCLVQ
     NHLCQKEFCL GCELGLLFHM LDLSRGDPCQ GSNFLRAFRT IPEASALGLI LADSDEATGK
     VNLGRLIQSW NRFILTQLHQ ETQEQEGPQA YRGAGSSSFG SSRDSVIGQL FSCEMENCSM
     CRCGKETVRV SSTLLFTLSY PESTEKPVKD YEFAQILKRS ICLEQNTQAW CENCEKYQPT
     VQTRNIRCLP DVLVINCEVN SSKEADFWKT QAEYAFQRAM MRRGGFEITK GKEISLGEWK
     ELGNPDTGHS YPSVEELKNV WIPHAIKMSL TKNKELDVCN WSESDELSPS DDPDSVYVYD
     LMATVVHILD SRTGGSLVGH IKVGETYHQR KEGVTHQQWY LFNDFLIEPV DKCEAVQFDM
     SWKVPAILYY ARRNLNAKYN LVIKNPIEAS VLLAEASLAR KQRKCHATFI PLMLSEMPQA
     GDLVGLDAEF VTLNEEEAEL RSDGTKSTIK PSQMSVARIT CVRGQGPNEG VPFIDDYIST
     QEQVVDYLTQ YSGIKPGDLD AKISSKHLTT LKSTYLKLRF LIDVGVKFVG HGLQKDFRVI
     NLMVPKDQVI DTVYLFHIPR KRMISLRFLA WYFL
//
DBGET integrated database retrieval system