ID R10A1_ARATH Reviewed; 216 AA.
AC Q8VZB9; Q9SJF4;
DT 27-JAN-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 27-MAR-2024, entry version 148.
DE RecName: Full=Large ribosomal subunit protein uL1z {ECO:0000303|PubMed:36423343};
DE AltName: Full=60S ribosomal protein L10a-1;
GN Name=RPL10AA; OrderedLocusNames=At1g08360; ORFNames=T27G7.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.127.2.398;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
RN [5]
RP INTERACTION WITH NUG2.
RX PubMed=21205822; DOI=10.1074/jbc.m110.200816;
RA Im C.H., Hwang S.M., Son Y.S., Heo J.B., Bang W.Y., Suwastika I.N.,
RA Shiina T., Bahk J.D.;
RT "Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases
RT function in pre-60S ribosomal subunit maturation of mono- and
RT dicotyledonous plants.";
RL J. Biol. Chem. 286:8620-8632(2011).
RN [6]
RP NOMENCLATURE.
RX PubMed=36423343; DOI=10.1093/plcell/koac333;
RA Scarpin M.R., Busche M., Martinez R.E., Harper L.C., Reiser L.,
RA Szakonyi D., Merchante C., Lan T., Xiong W., Mo B., Tang G., Chen X.,
RA Bailey-Serres J., Browning K.S., Brunkard J.O.;
RT "An updated nomenclature for plant ribosomal protein genes.";
RL Plant Cell 35:640-643(2023).
CC -!- SUBUNIT: Interacts with the GTPase NUG2. {ECO:0000269|PubMed:21205822}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL1 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF22886.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC006932; AAF22886.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28281.1; -; Genomic_DNA.
DR EMBL; AY065077; AAL38253.1; -; mRNA.
DR EMBL; AY114542; AAM47861.1; -; mRNA.
DR PIR; C86217; C86217.
DR RefSeq; NP_563813.2; NM_100709.5.
DR AlphaFoldDB; Q8VZB9; -.
DR SMR; Q8VZB9; -.
DR BioGRID; 22597; 124.
DR STRING; 3702.Q8VZB9; -.
DR PaxDb; 3702-AT1G08360-1; -.
DR ProteomicsDB; 236470; -.
DR EnsemblPlants; AT1G08360.1; AT1G08360.1; AT1G08360.
DR GeneID; 837356; -.
DR Gramene; AT1G08360.1; AT1G08360.1; AT1G08360.
DR KEGG; ath:AT1G08360; -.
DR Araport; AT1G08360; -.
DR TAIR; AT1G08360; -.
DR eggNOG; KOG1570; Eukaryota.
DR HOGENOM; CLU_062853_3_0_1; -.
DR InParanoid; Q8VZB9; -.
DR OMA; RTNIMYA; -.
DR OrthoDB; 5095880at2759; -.
DR PhylomeDB; Q8VZB9; -.
DR PRO; PR:Q8VZB9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8VZB9; baseline and differential.
DR Genevisible; Q8VZB9; AT.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0005576; C:extracellular region; HDA:TAIR.
DR GO; GO:0009506; C:plasmodesma; HDA:TAIR.
DR GO; GO:0042788; C:polysomal ribosome; IDA:CAFA.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd00403; Ribosomal_L1; 1.
DR Gene3D; 3.30.190.20; -; 1.
DR Gene3D; 3.40.50.790; -; 1.
DR InterPro; IPR002143; Ribosomal_uL1.
DR InterPro; IPR023674; Ribosomal_uL1-like.
DR InterPro; IPR028364; Ribosomal_uL1/biogenesis.
DR InterPro; IPR016095; Ribosomal_uL1_3-a/b-sand.
DR InterPro; IPR023673; Ribosomal_uL1_CS.
DR PANTHER; PTHR23105:SF221; 60S RIBOSOMAL PROTEIN L10A-1-RELATED; 1.
DR PANTHER; PTHR23105; RIBOSOMAL PROTEIN L7AE FAMILY MEMBER; 1.
DR Pfam; PF00687; Ribosomal_L1; 1.
DR PIRSF; PIRSF002155; Ribosomal_L1; 1.
DR SUPFAM; SSF56808; Ribosomal protein L1; 1.
DR PROSITE; PS01199; RIBOSOMAL_L1; 1.
PE 1: Evidence at protein level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..216
FT /note="Large ribosomal subunit protein uL1z"
FT /id="PRO_0000125832"
SQ SEQUENCE 216 AA; 24469 MW; 4BB3993AC48E49D3 CRC64;
MSKLQSEAVR EAITTITGKS EAKKRNFVET IELQIGLKNY DPQKDKRFSG SVKLPHIPRP
KMKICMLGDA QHVEEAEKMG LENMDVESLK KLNKNKKLVK KLAKKYHAFL ASESVIKQIP
RLLGPGLNKA GKFPTLVSHQ ESLESKVNET KATVKFQLKK VLCMGVAVGN LSMEEKQIFQ
NVQMSVNFLV SLLKKNWQNV RCLYLKSTMG PPQRIF
//
