GenomeNet

Database: UniProt
Entry: R4GKA5_CHICK
LinkDB: R4GKA5_CHICK
Original site: R4GKA5_CHICK 
ID   R4GKA5_CHICK            Unreviewed;       440 AA.
AC   R4GKA5;
DT   26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT   26-JUN-2013, sequence version 1.
DT   26-FEB-2020, entry version 34.
DE   SubName: Full=Tubulin epsilon and delta complex 1 {ECO:0000313|Ensembl:ENSGALP00000042595};
GN   Name=C8H14ORF80 {ECO:0000313|Ensembl:ENSGALP00000042595};
OS   Gallus gallus (Chicken).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC   Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
OX   NCBI_TaxID=9031 {ECO:0000313|Ensembl:ENSGALP00000042595, ECO:0000313|Proteomes:UP000000539};
RN   [1] {ECO:0000313|Ensembl:ENSGALP00000042595, ECO:0000313|Proteomes:UP000000539}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Red jungle fowl {ECO:0000313|Ensembl:ENSGALP00000042595,
RC   ECO:0000313|Proteomes:UP000000539};
RX   PubMed=15592404; DOI=10.1038/nature03154;
RG   International Chicken Genome Sequencing Consortium;
RA   Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C., Ponting C.P.,
RA   Bork P., Burt D.W., Groenen M.A.M., Delany M.E., Dodgson J.B.,
RA   Chinwalla A.T., Cliften P.F., Clifton S.W., Delehaunty K.D., Fronick C.,
RA   Fulton R.S., Graves T.A., Kremitzki C., Layman D., Magrini V.,
RA   McPherson J.D., Miner T.L., Minx P., Nash W.E., Nhan M.N., Nelson J.O.,
RA   Oddy L.G., Pohl C.S., Randall-Maher J., Smith S.M., Wallis J.W.,
RA   Yang S.-P., Romanov M.N., Rondelli C.M., Paton B., Smith J., Morrice D.,
RA   Daniels L., Tempest H.G., Robertson L., Masabanda J.S., Griffin D.K.,
RA   Vignal A., Fillon V., Jacobbson L., Kerje S., Andersson L.,
RA   Crooijmans R.P., Aerts J., van der Poel J.J., Ellegren H., Caldwell R.B.,
RA   Hubbard S.J., Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M.,
RA   Arakawa H., Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K.,
RA   Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E.,
RA   Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M.,
RA   Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S., Miller M.M.,
RA   Inoko H., Shiina T., Kaufman J., Salomonsen J., Skjoedt K., Wong G.K.-S.,
RA   Wang J., Liu B., Wang J., Yu J., Yang H., Nefedov M., Koriabine M.,
RA   Dejong P.J., Goodstadt L., Webber C., Dickens N.J., Letunic I., Suyama M.,
RA   Torrents D., von Mering C., Zdobnov E.M., Makova K., Nekrutenko A.,
RA   Elnitski L., Eswara P., King D.C., Yang S.-P., Tyekucheva S.,
RA   Radakrishnan A., Harris R.S., Chiaromonte F., Taylor J., He J.,
RA   Rijnkels M., Griffiths-Jones S., Ureta-Vidal A., Hoffman M.M., Severin J.,
RA   Searle S.M.J., Law A.S., Speed D., Waddington D., Cheng Z., Tuzun E.,
RA   Eichler E., Bao Z., Flicek P., Shteynberg D.D., Brent M.R., Bye J.M.,
RA   Huckle E.J., Chatterji S., Dewey C., Pachter L., Kouranov A.,
RA   Mourelatos Z., Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M.,
RA   Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O.,
RA   Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J., Betran E.,
RA   Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G., Furey T.S.,
RA   Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D., Eyras E.,
RA   Castelo R., Abril J.F., Castellano S., Camara F., Parra G., Guigo R.,
RA   Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A., Mardis E.R.,
RA   Wilson R.K.;
RT   "Sequence and comparative analysis of the chicken genome provide unique
RT   perspectives on vertebrate evolution.";
RL   Nature 432:695-716(2004).
RN   [2] {ECO:0000313|Ensembl:ENSGALP00000042595}
RP   IDENTIFICATION.
RC   STRAIN=Red jungle fowl {ECO:0000313|Ensembl:ENSGALP00000042595};
RG   Ensembl;
RL   Submitted (MAY-2013) to UniProtKB.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AADN05000934; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_422217.3; XM_422217.5.
DR   STRING; 9031.ENSGALP00000042595; -.
DR   PaxDb; R4GKA5; -.
DR   Ensembl; ENSGALT00000045846; ENSGALP00000042595; ENSGALG00000027492.
DR   GeneID; 424373; -.
DR   CTD; 424373; -.
DR   eggNOG; ENOG410IWUX; Eukaryota.
DR   eggNOG; ENOG4111XJF; LUCA.
DR   GeneTree; ENSGT00390000011474; -.
DR   HOGENOM; CLU_052124_0_0_1; -.
DR   OMA; SCTPGMG; -.
DR   OrthoDB; 1248596at2759; -.
DR   Proteomes; UP000000539; Chromosome 8.
DR   Bgee; ENSGALG00000027492; Expressed in heart and 9 other tissues.
DR   GO; GO:0005814; C:centriole; IEA:Ensembl.
DR   GO; GO:0005929; C:cilium; IEA:Ensembl.
DR   GO; GO:0045880; P:positive regulation of smoothened signaling pathway; IEA:Ensembl.
DR   InterPro; IPR027996; DUF4509.
DR   InterPro; IPR028100; DUF4510.
DR   Pfam; PF14970; DUF4509; 1.
DR   Pfam; PF14971; DUF4510; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000539}.
FT   DOMAIN          35..220
FT                   /note="DUF4509"
FT                   /evidence="ECO:0000259|Pfam:PF14970"
FT   DOMAIN          292..440
FT                   /note="DUF4510"
FT                   /evidence="ECO:0000259|Pfam:PF14971"
FT   COILED          293..313
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COILED          400..420
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   440 AA;  50554 MW;  BAF219CFF643FC86 CRC64;
     MRRCRALPAA VGALCRALPP RARLAPDVLR RARFDRPQAT LDFWRLLYAL LKQIHGGEWT
     ESDAIDTQIR FVKSALWYHG YGRPELYQLP SDGSAGSREL LLAFSWLLHR VNLLEWLLAR
     NRVKTGDETS VCTCEDDLSH SQKDTTEMAP GLEDRVDVRY LQWLNGKLRF QWRSLHAQHQ
     EQCKLLHKIH LFTSGSHTDQ ALGHFSVTET DLIRRPENYN QLLQHLELET MQLEAFLEWK
     QLEAVYWQWM ETVLDNMAEE GSLRTVRDAP VETSRLQEGA TCCPWAESMT VQIDRLSGEM
     TALHSQLQEL VARRRSAWCQ KVKTREEELQ KEDFSTKLGK IEESVELKLL DLTNHGAPNK
     NKMHGSCRLV FRSKRSASKT GFGGSASKEP VPAVSATEVI RELRMREASL QRELKQLQDE
     CKQRLDGIAE RLDGVICISP
//
DBGET integrated database retrieval system