ID R4KAF8_9FIRM Unreviewed; 678 AA.
AC R4KAF8;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 27-MAR-2024, entry version 54.
DE SubName: Full=Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:AGL00173.1};
GN ORFNames=Desgi_0613 {ECO:0000313|EMBL:AGL00173.1};
OS Desulfoscipio gibsoniae DSM 7213.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Desulfallaceae;
OC Desulfoscipio.
OX NCBI_TaxID=767817 {ECO:0000313|EMBL:AGL00173.1, ECO:0000313|Proteomes:UP000013520};
RN [1] {ECO:0000313|EMBL:AGL00173.1, ECO:0000313|Proteomes:UP000013520}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 7213 {ECO:0000313|EMBL:AGL00173.1,
RC ECO:0000313|Proteomes:UP000013520};
RG US DOE Joint Genome Institute;
RA Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S.,
RA Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R.,
RA Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Parshina S.,
RA Plugge C., Muyzer G., Kuever J., Ivanova A., Nazina T., Klenk H.-P.,
RA Brambilla E., Spring S., Stams A.F., Woyke T.;
RT "Complete sequence of Desulfotomaculum gibsoniae DSM 7213.";
RL Submitted (JAN-2012) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP003273; AGL00173.1; -; Genomic_DNA.
DR RefSeq; WP_006523997.1; NC_021184.1.
DR AlphaFoldDB; R4KAF8; -.
DR STRING; 767817.Desgi_0613; -.
DR KEGG; dgi:Desgi_0613; -.
DR eggNOG; COG3284; Bacteria.
DR HOGENOM; CLU_000445_8_12_9; -.
DR OrthoDB; 9803970at2; -.
DR Proteomes; UP000013520; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013656; PAS_4.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071:SF119; SIGMA-54 INTERACTING PROTEIN; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF08448; PAS_4; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000313|EMBL:AGL00173.1};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000013520};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 216..267
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 345..575
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 678 AA; 74723 MW; C4801A9F1AEE0EA9 CRC64;
MVPDQDTLKT AWRAFINNQE DSYRHVRPII MDSWQRCRRN KVNPLQKYVY KTRDRKILED
KTRKNREWLE VARPVMRTLY RFVAGSGFIV TVADTEGFLL EILGDQEVID DIARGNFVPG
ASWSEQNAGT NGVGTALVAG QPLQVFSYEH YCVCAHRSTC SAAPIHGIDR TIVGVLNMTG
DFKKAHPHTL GMVVAGADAI NRQLVSEKAW QERDVANRFR EALMESISEG ILATDRNHTV
IQVNQAAADL LHIKPELAIG KDVREVLPGG GDWEKVIKGE RFITDLEQDI TTSFGTAKIT
ATSRPVRAHN GQNEGTVLVL TAINRVRKLA QRMSGAVARL SFANMIGENP GFKDCLTQAK
SAARSNSTVL LLGESGTGKD VLAQAIHNES LRAGGPFVAI NCGAIPRDLI GSELFGYTEG
AFTGAKKGGS PGKFELADGG TVFLDEIGDM PSELQTTLLR VLEQKVITRI GGSQVVPVNV
RVIAATNRDL ALEVERGNFR RDLYYRLNVV SIRLMPLRER KEDIALLFKH FLDRLCTQAG
KSVTSIDPAL WPLIKAYAWP GNVRELQNAV ERALHFLNDS SLGTEHLPEE VRRGGVISKD
STAIKDRVNS GGSVAFNKQA ETVDVEDEKN IILNLLHENG GNVSRVAKQL GIARTTLYRK
LAKYGLQRNV IVASNDDT
//
