ID R5AIB9_9FIRM Unreviewed; 669 AA.
AC R5AIB9;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 27-MAR-2024, entry version 36.
DE RecName: Full=Cyclic-di-AMP phosphodiesterase {ECO:0000256|PIRNR:PIRNR026583};
DE EC=3.1.4.- {ECO:0000256|PIRNR:PIRNR026583};
GN ORFNames=BN453_00079 {ECO:0000313|EMBL:CCX39116.1};
OS Firmicutes bacterium CAG:102.
OC Bacteria; Bacillota.
OX NCBI_TaxID=1262998 {ECO:0000313|EMBL:CCX39116.1, ECO:0000313|Proteomes:UP000018112};
RN [1] {ECO:0000313|EMBL:CCX39116.1, ECO:0000313|Proteomes:UP000018112}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:102 {ECO:0000313|EMBL:CCX39116.1,
RC ECO:0000313|Proteomes:UP000018112};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Has phosphodiesterase (PDE) activity against cyclic-di-AMP
CC (c-di-AMP). {ECO:0000256|PIRNR:PIRNR026583}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=3',3'-c-di-AMP + H2O = 5'-O-phosphonoadenylyl-(3'->5')-
CC adenosine + H(+); Xref=Rhea:RHEA:54420, ChEBI:CHEBI:15377,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:71500, ChEBI:CHEBI:138171;
CC Evidence={ECO:0000256|PIRNR:PIRNR026583};
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|ARBA:ARBA00004651};
CC Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004651}. Membrane
CC {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein
CC {ECO:0000256|ARBA:ARBA00004141}.
CC -!- SIMILARITY: Belongs to the GdpP/PdeA phosphodiesterase family.
CC {ECO:0000256|PIRNR:PIRNR026583}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CCX39116.1}.
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DR EMBL; CAWG010000008; CCX39116.1; -; Genomic_DNA.
DR AlphaFoldDB; R5AIB9; -.
DR STRING; 1262998.BN453_00079; -.
DR Proteomes; UP000018112; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0106409; F:cyclic-di-AMP phosphodiesterase activity; IEA:RHEA.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:UniProtKB-UniRule.
DR Gene3D; 3.10.310.30; -; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.90.1640.10; inorganic pyrophosphatase (n-terminal core); 1.
DR InterPro; IPR001667; DDH_dom.
DR InterPro; IPR038763; DHH_sf.
DR InterPro; IPR003156; DHHA1_dom.
DR InterPro; IPR014528; GdpP/PdeA.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR PANTHER; PTHR47618; BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA; 1.
DR PANTHER; PTHR47618:SF2; CYCLIC-DI-AMP PHOSPHODIESTERASE GDPP; 1.
DR Pfam; PF01368; DHH; 1.
DR Pfam; PF02272; DHHA1; 1.
DR PIRSF; PIRSF026583; YybT; 1.
DR SMART; SM00267; GGDEF; 1.
DR SUPFAM; SSF64182; DHH phosphoesterases; 1.
DR PROSITE; PS50887; GGDEF; 1.
PE 3: Inferred from homology;
KW Cell membrane {ECO:0000256|ARBA:ARBA00022475,
KW ECO:0000256|PIRNR:PIRNR026583}; Hydrolase {ECO:0000256|PIRNR:PIRNR026583};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|PIRNR:PIRNR026583};
KW Reference proteome {ECO:0000313|Proteomes:UP000018112};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}.
FT TRANSMEM 21..39
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 189..317
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
SQ SEQUENCE 669 AA; 73647 MW; 1755447CD8DB237D CRC64;
MDDMSENAKS EQYQEKTGRE SNPIGVAAVI LLLCICFLID ARVGFGALIG AAAGFFAWSL
LKDNGTRKEE NADDRVAFLD TTVLQHNFPL PQNMPIPYAV LDIRGHILMY NEKFAKEFPN
MELILPVVDQ LKKAGIGKHA VVVVEEKHYD AMLNQCEVVE ENGAVGNVLN MTLVDISKQY
ELEERLDRNE TVIGMLFLDN YEDVMDSLAE DRQPLLSAIV DRKLTQFAAD ANGVMRKLQM
DRYILLLSKG DLEALKEKKF DIMNTIREIN VGEHIPVTMS MGVGIGGGSL EDAMQSAKAA
LDLALGRGGD QVLIKEGEKY LFYGAKAGEV GRNGRIRARV KADALWELMG ASSSIMVMGH
RNGDLDSLGS SMGICAIARA MGKKCRIVMN EVSTGIKCIS EQMTQDEYYQ TAFMKEKDAL
KEMDDKTLVI VVDTHRTSMV EGPSVLEAAK KIVVFDHHRK SAQDFIEQAV LLYHEPYASS
TSELITEMIQ HIGKKIKLRS IEADALLAGI TVDTKNFAVK TGAITFESAG FLRRNGADSI
RVRMLFQNDI DSYKAKATAV RDAELYLGSM ALSVCPANRE NSTLTAAQAA DDLMNVTGVK
ASFVCCKVDD VVYVSARSFG DVNVQRIMEK LGGGGHFTVS GAQLKDCSAE EAKERVRSAI
DEYLKEETT
//
