GenomeNet

Database: UniProt
Entry: R5D3G2_9FIRM
LinkDB: R5D3G2_9FIRM
Original site: R5D3G2_9FIRM 
ID   R5D3G2_9FIRM            Unreviewed;       720 AA.
AC   R5D3G2;
DT   24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT   24-JUL-2013, sequence version 1.
DT   24-JAN-2024, entry version 28.
DE   SubName: Full=Putative transcription accessory protein {ECO:0000313|EMBL:CCX71417.1};
GN   ORFNames=BN705_00034 {ECO:0000313|EMBL:CCX71417.1};
OS   Firmicutes bacterium CAG:555.
OC   Bacteria; Bacillota.
OX   NCBI_TaxID=1263030 {ECO:0000313|EMBL:CCX71417.1, ECO:0000313|Proteomes:UP000018402};
RN   [1] {ECO:0000313|EMBL:CCX71417.1, ECO:0000313|Proteomes:UP000018402}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=MGS:555 {ECO:0000313|Proteomes:UP000018402};
RA   Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA   Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA   Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA   Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA   Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA   Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA   Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA   Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA   Wang J., Brunak S., Ehrlich S.D.;
RT   "Dependencies among metagenomic species, viruses, plasmids and units of
RT   genetic variation.";
RL   Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:CCX71417.1}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CAWW010000048; CCX71417.1; -; Genomic_DNA.
DR   AlphaFoldDB; R5D3G2; -.
DR   STRING; 1263030.BN705_00034; -.
DR   Proteomes; UP000018402; Unassembled WGS sequence.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR   Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR   Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR   Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR   Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR   InterPro; IPR041692; HHH_9.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR010994; RuvA_2-like.
DR   InterPro; IPR003029; S1_domain.
DR   InterPro; IPR023323; Tex-like_dom_sf.
DR   InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR   InterPro; IPR018974; Tex-like_N.
DR   InterPro; IPR032639; Tex_YqgF.
DR   InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR   InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR   PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR   PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR   Pfam; PF12836; HHH_3; 1.
DR   Pfam; PF17674; HHH_9; 1.
DR   Pfam; PF00575; S1; 1.
DR   Pfam; PF09371; Tex_N; 1.
DR   Pfam; PF16921; Tex_YqgF; 1.
DR   SMART; SM00316; S1; 1.
DR   SMART; SM00732; YqgFc; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR   SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR   PROSITE; PS50126; S1; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000018402}.
FT   DOMAIN          648..717
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
SQ   SEQUENCE   720 AA;  78767 MW;  EC5CF6400D9A3FCC CRC64;
     MDDIIKILAA ELGKKPEHIE NVIKLIDEGN TIPFIARYRK ELHGAMDDTS LRTLEKRLAY
     LRGLAERRET VKTAIAEQGK LTEELKKAID AATTLVEVED LYAPFKQKRR TRATIAKEKG
     LEPLADVLFA QHRDGPVPIE EAAKYIDPEK GVDTAEAALS GASDILAERI SDDAAVRKSL
     RAFIKSNGFI ESRAATEDDS VYSQYYEFSQ RIGRMQGHQT LAVNRGEKEK LLKVSVVLDK
     DAALVVLRRA VFKGPSPSLE FIKSVCEDAY TRLIFPSLER EIRSELTDTA AEGAIGQFAL
     NLRPLLMQPP VKGKVTMGLD PGYRMGCKVA VVDATGKVLD TAVVYPTFSD AKKEDAIRTL
     SRLIRKHNVV NIAIGNGTAS RETEQMTVEL IRREKEAGHE LAYMIVSEAG ASVYSASELA
     ASEFPQFDVN LRSAVSIARR LQDPLAELVK IDPKAIGVGQ YQHDMPPKRL DEALNAVVED
     CVNSVGVDVN TASPSLLQRV SGLTSATAKN IVAYREENGA FTSRSQIKKV PKLGPKAYQQ
     CAGFLRVPES KTILDNTAVH PESYAAAETL LTLTGHSMAD VKNSALSDLP AKLKAYGEEA
     AAAEAGIGVP TMRDVVSELL KPGRDIRDDL PKPILRTDVL ELSDLKPGMK LTGTVRNVID
     FGVFVDIGVH QDGLVHISQV CNKFIKHPSE VVSVGDIVDV VVLDVDEKKK RISLSMKQAK
//
DBGET integrated database retrieval system