ID R5D3G2_9FIRM Unreviewed; 720 AA.
AC R5D3G2;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 28.
DE SubName: Full=Putative transcription accessory protein {ECO:0000313|EMBL:CCX71417.1};
GN ORFNames=BN705_00034 {ECO:0000313|EMBL:CCX71417.1};
OS Firmicutes bacterium CAG:555.
OC Bacteria; Bacillota.
OX NCBI_TaxID=1263030 {ECO:0000313|EMBL:CCX71417.1, ECO:0000313|Proteomes:UP000018402};
RN [1] {ECO:0000313|EMBL:CCX71417.1, ECO:0000313|Proteomes:UP000018402}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:555 {ECO:0000313|Proteomes:UP000018402};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CCX71417.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CAWW010000048; CCX71417.1; -; Genomic_DNA.
DR AlphaFoldDB; R5D3G2; -.
DR STRING; 1263030.BN705_00034; -.
DR Proteomes; UP000018402; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR InterPro; IPR041692; HHH_9.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR010994; RuvA_2-like.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR023323; Tex-like_dom_sf.
DR InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR InterPro; IPR018974; Tex-like_N.
DR InterPro; IPR032639; Tex_YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF12836; HHH_3; 1.
DR Pfam; PF17674; HHH_9; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF09371; Tex_N; 1.
DR Pfam; PF16921; Tex_YqgF; 1.
DR SMART; SM00316; S1; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR PROSITE; PS50126; S1; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000018402}.
FT DOMAIN 648..717
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
SQ SEQUENCE 720 AA; 78767 MW; EC5CF6400D9A3FCC CRC64;
MDDIIKILAA ELGKKPEHIE NVIKLIDEGN TIPFIARYRK ELHGAMDDTS LRTLEKRLAY
LRGLAERRET VKTAIAEQGK LTEELKKAID AATTLVEVED LYAPFKQKRR TRATIAKEKG
LEPLADVLFA QHRDGPVPIE EAAKYIDPEK GVDTAEAALS GASDILAERI SDDAAVRKSL
RAFIKSNGFI ESRAATEDDS VYSQYYEFSQ RIGRMQGHQT LAVNRGEKEK LLKVSVVLDK
DAALVVLRRA VFKGPSPSLE FIKSVCEDAY TRLIFPSLER EIRSELTDTA AEGAIGQFAL
NLRPLLMQPP VKGKVTMGLD PGYRMGCKVA VVDATGKVLD TAVVYPTFSD AKKEDAIRTL
SRLIRKHNVV NIAIGNGTAS RETEQMTVEL IRREKEAGHE LAYMIVSEAG ASVYSASELA
ASEFPQFDVN LRSAVSIARR LQDPLAELVK IDPKAIGVGQ YQHDMPPKRL DEALNAVVED
CVNSVGVDVN TASPSLLQRV SGLTSATAKN IVAYREENGA FTSRSQIKKV PKLGPKAYQQ
CAGFLRVPES KTILDNTAVH PESYAAAETL LTLTGHSMAD VKNSALSDLP AKLKAYGEEA
AAAEAGIGVP TMRDVVSELL KPGRDIRDDL PKPILRTDVL ELSDLKPGMK LTGTVRNVID
FGVFVDIGVH QDGLVHISQV CNKFIKHPSE VVSVGDIVDV VVLDVDEKKK RISLSMKQAK
//