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Database: UniProt
Entry: R5EBW7_9CLOT
LinkDB: R5EBW7_9CLOT
Original site: R5EBW7_9CLOT 
ID   R5EBW7_9CLOT            Unreviewed;       169 AA.
AC   R5EBW7;
DT   24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT   24-JUL-2013, sequence version 1.
DT   24-JAN-2024, entry version 39.
DE   RecName: Full=Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014};
GN   Name=rimM {ECO:0000256|HAMAP-Rule:MF_00014};
GN   ORFNames=BN724_02051 {ECO:0000313|EMBL:CCX88744.1};
OS   Clostridium sp. CAG:590.
OC   Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC   Clostridium.
OX   NCBI_TaxID=1262825 {ECO:0000313|EMBL:CCX88744.1, ECO:0000313|Proteomes:UP000017939};
RN   [1] {ECO:0000313|EMBL:CCX88744.1, ECO:0000313|Proteomes:UP000017939}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=MGS:590 {ECO:0000313|Proteomes:UP000017939};
RA   Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA   Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA   Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA   Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA   Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA   Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA   Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA   Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA   Wang J., Brunak S., Ehrlich S.D.;
RT   "Dependencies among metagenomic species, viruses, plasmids and units of
RT   genetic variation.";
RL   Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: An accessory protein needed during the final step in the
CC       assembly of 30S ribosomal subunit, possibly for assembly of the head
CC       region. Essential for efficient processing of 16S rRNA. May be needed
CC       both before and after RbfA during the maturation of 16S rRNA. It has
CC       affinity for free ribosomal 30S subunits but not for 70S ribosomes.
CC       {ECO:0000256|HAMAP-Rule:MF_00014}.
CC   -!- SUBUNIT: Binds ribosomal protein uS19. {ECO:0000256|HAMAP-
CC       Rule:MF_00014}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00014}.
CC   -!- DOMAIN: The PRC barrel domain binds ribosomal protein uS19.
CC       {ECO:0000256|HAMAP-Rule:MF_00014}.
CC   -!- SIMILARITY: Belongs to the RimM family. {ECO:0000256|HAMAP-
CC       Rule:MF_00014}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:CCX88744.1}.
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DR   EMBL; CAXF010000166; CCX88744.1; -; Genomic_DNA.
DR   AlphaFoldDB; R5EBW7; -.
DR   STRING; 1262825.BN724_02051; -.
DR   Proteomes; UP000017939; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0005840; C:ribosome; IEA:InterPro.
DR   GO; GO:0043022; F:ribosome binding; IEA:InterPro.
DR   GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:UniProtKB-UniRule.
DR   GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-UniRule.
DR   Gene3D; 2.30.30.240; PRC-barrel domain; 1.
DR   Gene3D; 2.40.30.60; RimM; 1.
DR   HAMAP; MF_00014; Ribosome_mat_RimM; 1.
DR   InterPro; IPR027275; PRC-brl_dom.
DR   InterPro; IPR011033; PRC_barrel-like_sf.
DR   InterPro; IPR011961; RimM.
DR   InterPro; IPR002676; RimM_N.
DR   InterPro; IPR036976; RimM_N_sf.
DR   InterPro; IPR009000; Transl_B-barrel_sf.
DR   NCBIfam; TIGR02273; 16S_RimM; 1.
DR   PANTHER; PTHR33692; RIBOSOME MATURATION FACTOR RIMM; 1.
DR   PANTHER; PTHR33692:SF1; RIBOSOME MATURATION FACTOR RIMM; 1.
DR   Pfam; PF05239; PRC; 1.
DR   Pfam; PF01782; RimM; 1.
DR   SUPFAM; SSF50346; PRC-barrel domain; 1.
DR   SUPFAM; SSF50447; Translation proteins; 1.
PE   3: Inferred from homology;
KW   Chaperone {ECO:0000256|ARBA:ARBA00023186, ECO:0000256|HAMAP-Rule:MF_00014};
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_00014};
KW   Reference proteome {ECO:0000313|Proteomes:UP000017939};
KW   Ribosome biogenesis {ECO:0000256|ARBA:ARBA00022517, ECO:0000256|HAMAP-
KW   Rule:MF_00014};
KW   rRNA processing {ECO:0000256|ARBA:ARBA00022552, ECO:0000256|HAMAP-
KW   Rule:MF_00014}.
FT   DOMAIN          6..87
FT                   /note="RimM N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF01782"
FT   DOMAIN          94..166
FT                   /note="PRC-barrel"
FT                   /evidence="ECO:0000259|Pfam:PF05239"
SQ   SEQUENCE   169 AA;  19339 MW;  F097340313258A1E CRC64;
     MEDLLQVGVI TSTHGVRGEV KVFPTTDDNA RFKKLKDCYL EYKNEMLPIK VQGAKFFKNM
     VILKFDGIDN INDVEKYKQC KLYVDREHAV ALDEDEYFMT DLIGLTVEKE DGQVLGTLTE
     IIPTGANDVY VVAGEDKKEW LLPAIRECIL NVDMEHGKMT IRLMKGMEE
//
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