ID R5IQ19_9CLOT Unreviewed; 701 AA.
AC R5IQ19;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 27-MAR-2024, entry version 46.
DE RecName: Full=Sigma-54 factor interaction domain-containing protein {ECO:0000259|PROSITE:PS50045};
GN ORFNames=BN757_00574 {ECO:0000313|EMBL:CCY44205.1};
OS Clostridium sp. CAG:7.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC Clostridium.
OX NCBI_TaxID=1262832 {ECO:0000313|EMBL:CCY44205.1, ECO:0000313|Proteomes:UP000018268};
RN [1] {ECO:0000313|EMBL:CCY44205.1, ECO:0000313|Proteomes:UP000018268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:7 {ECO:0000313|Proteomes:UP000018268};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CCY44205.1}.
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DR EMBL; CAYE010000169; CCY44205.1; -; Genomic_DNA.
DR AlphaFoldDB; R5IQ19; -.
DR STRING; 1262832.BN757_00574; -.
DR Proteomes; UP000018268; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR PANTHER; PTHR32071:SF119; SIGMA-54 INTERACTING PROTEIN; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000018268}.
FT DOMAIN 341..566
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT REGION 595..619
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 681..701
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 599..617
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 701 AA; 77842 MW; A9C165FF1D1910F8 CRC64;
MKKIAVVALD PLAGASYTKE VRDLFGEYAG VVGYSVRDGS AAGVLPRADL FAISTDAYGS
AEEEARHVPI DSQIMSIEVT FYWETLKKLF EIPQGTKVLF VNVTSNMARE AITQLSSLGV
NHLQFIPYYP GAVLEEPVDI AVTPGESRFV PPSVKTVIDC DHRPCSYGMM VEIALRLGLE
YLPETESFMN YAKVVASNHY SFDLMYAKSR RQESQMHILA ESLDEGLIGV NETGEVFVCN
KKACQIARIS EELAMGKKGE EVFPYIPFYQ VLREKKAVPE KVIRLFGTNV SLAVVPVVRK
EDCIGAFAML QKFNEQESRQ NALRRQLMQK GHYARYTFDD VIGNSDAITE TINILRKMAA
TESPVLLIGE TGTGKELMAH AVHQASGRAA GPFIAINVAA MPENLLESEL FGYEEGAFTG
AKKGGRPGLF EFAHHGTLFL DEVEGMSLSM QVKLLRVLQE GEIMRVGGGS IIRVDVRIVA
ATNEALEKKI QEGSFRKDLY YRLNALTVEI PPLRKRGDDI FMLFDFFMRK MGGNFTLSEE
VKAFLRRHPW PGNIRELQNA VEYFNYLAKP VIELSDLPPT MTRVVGVGLD VVGPGESSGE
NENVKTGTTQ LKEGSTYSGH MDTEAKKQFV LKQLALAWKA GETVGREKIL EAAKKDHIPM
TQKQARDLLK ELEKEGLLQV GRGRGGSRIT EKGLKKLEKQ K
//
