ID R5PQQ6_9BACT Unreviewed; 723 AA.
AC R5PQQ6;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 32.
DE SubName: Full=S1 RNA binding domain protein {ECO:0000313|EMBL:CCZ11267.1};
GN ORFNames=BN465_00608 {ECO:0000313|EMBL:CCZ11267.1};
OS Prevotella sp. CAG:1092.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae;
OC Prevotella.
OX NCBI_TaxID=1262919 {ECO:0000313|EMBL:CCZ11267.1, ECO:0000313|Proteomes:UP000017987};
RN [1] {ECO:0000313|EMBL:CCZ11267.1, ECO:0000313|Proteomes:UP000017987}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:1092 {ECO:0000313|Proteomes:UP000017987};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CCZ11267.1}.
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DR EMBL; CAZL010000084; CCZ11267.1; -; Genomic_DNA.
DR AlphaFoldDB; R5PQQ6; -.
DR STRING; 1262919.BN465_00608; -.
DR Proteomes; UP000017987; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd05685; S1_Tex; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR InterPro; IPR041692; HHH_9.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR010994; RuvA_2-like.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR044146; S1_Tex.
DR InterPro; IPR023323; Tex-like_dom_sf.
DR InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR InterPro; IPR018974; Tex-like_N.
DR InterPro; IPR032639; Tex_YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF12836; HHH_3; 1.
DR Pfam; PF17674; HHH_9; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF09371; Tex_N; 1.
DR Pfam; PF16921; Tex_YqgF; 1.
DR SMART; SM00316; S1; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR PROSITE; PS50126; S1; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000017987}.
FT DOMAIN 652..721
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
SQ SEQUENCE 723 AA; 80163 MW; 2578836BEF45F49C CRC64;
MNTFTNIIAK ELQLPASGVD GTLQLLDEGC TIPFIARYRK ERTGGLDDVQ IGDISARYDK
LKELAKRKET ILKSIEEQGK LDDKLKKKIE DCWDANTLED IYLPFKPKRR TRAQIAREYG
LESLATMILL QRENDIEAAA KRLINSAAVQ KALAEHKVKE FTVDDALQAA KDIIAENISE
SEDCRHQLRA TFKREAEIAS KVVKAKADSE EAQKYRDYFD FAEPLSRCTG NRLLAMRRGE
AEGILRIKIS IDGERATERL KRQYVRGNGK CSQLVAEAVE DSYKRLLVPS IENEFSALSK
EKADDEAIEV FTTNLRQLLL AAPLGQKSVM GVDPGIRTGC KVVVLDKQGN LLFHDVVFPF
PPKGNAENAA RHFAKIAAQY SIEAVAVGNG TASRETTDIL NKVFSEGDNQ KPVYVVSEDG
ASIYSASKIA RDEFPDQDVT VRGAVSIARR LMDPLAELVK IDAKSIGVGQ YQHDVDQTKL
KKSLDQTVEN CVNLVGVNVN TASQQLLTYI SGLGPALAKN IIEYRRENGD FTSRAQLKKV
PRLGANAYTQ CAGFLRIPNA KNPLDNSAVH PESYDIVKRM AADSGCTVKE LIANKERLKA
INIKNYVSDT IGLPTLTDIM KELDKPGLDP RGEVEQFSFS DDIHELKDVE VGMVVPGIVT
NITKFGAFVD IGVHQDGLVH ISQMSSKFIH DPNEVVKLHQ HVTVKVTEVD LVRKRIALSM
KGV
//
