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Database: UniProt
Entry: R5W9C5_9BACT
LinkDB: R5W9C5_9BACT
Original site: R5W9C5_9BACT 
ID   R5W9C5_9BACT            Unreviewed;       361 AA.
AC   R5W9C5;
DT   24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT   24-JUL-2013, sequence version 1.
DT   24-JAN-2024, entry version 27.
DE   RecName: Full=Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093};
DE            Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};
GN   Name=prfA {ECO:0000256|HAMAP-Rule:MF_00093};
GN   ORFNames=BN505_00527 {ECO:0000313|EMBL:CCZ99265.1};
OS   Alistipes sp. CAG:157.
OC   Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae;
OC   Alistipes.
OX   NCBI_TaxID=1262692 {ECO:0000313|EMBL:CCZ99265.1, ECO:0000313|Proteomes:UP000018346};
RN   [1] {ECO:0000313|EMBL:CCZ99265.1, ECO:0000313|Proteomes:UP000018346}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=MGS:157 {ECO:0000313|Proteomes:UP000018346};
RA   Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA   Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA   Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA   Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA   Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA   Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA   Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA   Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA   Wang J., Brunak S., Ehrlich S.D.;
RT   "Dependencies among metagenomic species, viruses, plasmids and units of
RT   genetic variation.";
RL   Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Peptide chain release factor 1 directs the termination of
CC       translation in response to the peptide chain termination codons UAG and
CC       UAA. {ECO:0000256|ARBA:ARBA00002986, ECO:0000256|HAMAP-Rule:MF_00093}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00093}.
CC   -!- PTM: Methylated by PrmC. Methylation increases the termination
CC       efficiency of RF1. {ECO:0000256|HAMAP-Rule:MF_00093}.
CC   -!- SIMILARITY: Belongs to the prokaryotic/mitochondrial release factor
CC       family. {ECO:0000256|ARBA:ARBA00010835, ECO:0000256|HAMAP-
CC       Rule:MF_00093}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:CCZ99265.1}.
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DR   EMBL; CBAZ010000138; CCZ99265.1; -; Genomic_DNA.
DR   AlphaFoldDB; R5W9C5; -.
DR   Proteomes; UP000018346; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0016149; F:translation release factor activity, codon specific; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.30.160.20; -; 1.
DR   Gene3D; 3.30.70.1660; -; 1.
DR   Gene3D; 6.10.140.1950; -; 1.
DR   HAMAP; MF_00093; Rel_fac_1; 1.
DR   InterPro; IPR005139; PCRF.
DR   InterPro; IPR000352; Pep_chain_release_fac_I.
DR   InterPro; IPR045853; Pep_chain_release_fac_I_sf.
DR   InterPro; IPR004373; RF-1.
DR   NCBIfam; TIGR00019; prfA; 1.
DR   PANTHER; PTHR43804; LD18447P; 1.
DR   PANTHER; PTHR43804:SF7; LD18447P; 1.
DR   Pfam; PF03462; PCRF; 1.
DR   Pfam; PF00472; RF-1; 1.
DR   SMART; SM00937; PCRF; 1.
DR   SUPFAM; SSF75620; Release factor; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00093};
KW   Methylation {ECO:0000256|ARBA:ARBA00022481, ECO:0000256|HAMAP-
KW   Rule:MF_00093};
KW   Protein biosynthesis {ECO:0000256|ARBA:ARBA00022917, ECO:0000256|HAMAP-
KW   Rule:MF_00093}; Reference proteome {ECO:0000313|Proteomes:UP000018346}.
FT   DOMAIN          68..182
FT                   /note="Peptide chain release factor"
FT                   /evidence="ECO:0000259|SMART:SM00937"
FT   COILED          53..99
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COILED          260..287
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   MOD_RES         238
FT                   /note="N5-methylglutamine"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00093"
SQ   SEQUENCE   361 AA;  40959 MW;  608E2A511D783A53 CRC64;
     MADNNILNRL DGLKLKFEEI GQQMTDPEVI GDMKKFVQLN KEYKELKPII ETSERYRTAV
     NNLREAKDIL ANEKDEDLRE MAREEVAELE PAIDRLEEEI KLLLIPKDPQ DEKNAIVEIR
     GGTGGDEAAL FAGDLLRMYT KYAESKGWKY EINSASEGSS GGYKEVVMKV TGDNVYGTLK
     YESGVHRVQR VPQTETQGRV HTSAASVAVL PEAEEFDIEL NMNDIRKDTF CSSGPGGQSV
     NTTYSAIRLT HIPTGIVVQC QDQKSQLKNF DKALEELRTR IFNLEYQKYL DEIAGKRKTM
     VSTGDRSAKI RTYNYPQGRV TDHRINYTIY NLSSFMDGDI QDVIDHLIVA ENAERLKESE
     L
//
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