ID R6DYT9_9FIRM Unreviewed; 616 AA.
AC R6DYT9;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 31.
DE RecName: Full=Radical SAM core domain-containing protein {ECO:0000259|PROSITE:PS51918};
GN ORFNames=BN710_00052 {ECO:0000313|EMBL:CDA90054.1};
OS Ruminococcus sp. CAG:563.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae;
OC Ruminococcus.
OX NCBI_TaxID=1262961 {ECO:0000313|EMBL:CDA90054.1, ECO:0000313|Proteomes:UP000018082};
RN [1] {ECO:0000313|EMBL:CDA90054.1, ECO:0000313|Proteomes:UP000018082}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:563 {ECO:0000313|Proteomes:UP000018082};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CDA90054.1}.
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DR EMBL; CBCR010000066; CDA90054.1; -; Genomic_DNA.
DR AlphaFoldDB; R6DYT9; -.
DR STRING; 1262961.BN710_00052; -.
DR Proteomes; UP000018082; Unassembled WGS sequence.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd01335; Radical_SAM; 1.
DR Gene3D; 3.80.30.20; tm_1862 like domain; 1.
DR InterPro; IPR023862; CHP03960_rSAM.
DR InterPro; IPR006638; Elp3/MiaA/NifB-like_rSAM.
DR InterPro; IPR045784; Radical_SAM_N2.
DR InterPro; IPR007197; rSAM.
DR InterPro; IPR023404; rSAM_horseshoe.
DR NCBIfam; TIGR03960; rSAM_fuse_unch; 1.
DR PANTHER; PTHR42731:SF1; RADICAL SAM DOMAIN PROTEIN; 1.
DR PANTHER; PTHR42731; SLL1084 PROTEIN; 1.
DR Pfam; PF04055; Radical_SAM; 1.
DR Pfam; PF19864; Radical_SAM_N2; 1.
DR SFLD; SFLDG01082; B12-binding_domain_containing; 1.
DR SFLD; SFLDS00029; Radical_SAM; 1.
DR SMART; SM00729; Elp3; 1.
DR SUPFAM; SSF102114; Radical SAM enzymes; 1.
DR PROSITE; PS51918; RADICAL_SAM; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000018082}.
FT DOMAIN 253..495
FT /note="Radical SAM core"
FT /evidence="ECO:0000259|PROSITE:PS51918"
SQ SEQUENCE 616 AA; 70129 MW; DDDFF6E1969BDCC3 CRC64;
MFSQKIEKIL QEVQKPGRYV GGELNSVIKD KNKVDVRYAF CFPDTYEIGM SHLGMKILYS
VVNRIDYAWC ERVFAPDVDM EEKMRENNIR LWALESGDPL DEFDMLGFTL QYELSYSNIL
NMLDLAGIPL YSKDRTELAP LVVAGGPCAC NGEPIADFID IFMLGDGEET TVQLVDLIRK
HKKLGSPKIE LLREVAQLKG FYVPAFYDVE YKEDGTIKSV TNKETAPEKA VKAIVEDMDK
VYYPESFVVP SIEVVHDRVT AEIFRGCIRG CRFCQAGFLY RPIREKSPEV VEEQCRTLCE
STGYDEISLC SLSTSDYTGL QPLLTSMLKW TTEENINVAL PSLRVDNFSD ELMEKLTEVR
RSSLTFAPEA GTQRLRDAIN KNVTYDDVMK TVNMAFSGGW TAVKLYFMIG LPTETLEDVA
GIARLGQQVV DEFYRNPDRP KGKGVQVSIS ASSFVPKPFT PFQWEPQDTM EQLEEKQKHL
YASVTTKKIR ISTHLTPTSF LEGVFARGDR RLSKVLELAW KKGCKFDSWD DHFDFDKWME
AFDEAGLDPS FYANRRRDFD EILPWDHLDY GISKKFLMNE NKKAHESVTT PHCRIKCAGC
GANRLNGGKC DARSEA
//
