ID R6FHN2_9FIRM Unreviewed; 259 AA.
AC R6FHN2;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE RecName: Full=RNA-binding S4 domain-containing protein {ECO:0000259|SMART:SM00363};
GN ORFNames=BN538_00435 {ECO:0000313|EMBL:CDB01527.1};
OS Lachnospiraceae bacterium CAG:215.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae.
OX NCBI_TaxID=1262985 {ECO:0000313|EMBL:CDB01527.1, ECO:0000313|Proteomes:UP000018007};
RN [1] {ECO:0000313|EMBL:CDB01527.1, ECO:0000313|Proteomes:UP000018007}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:215 {ECO:0000313|Proteomes:UP000018007};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CDB01527.1}.
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DR EMBL; CBCV010000422; CDB01527.1; -; Genomic_DNA.
DR AlphaFoldDB; R6FHN2; -.
DR Proteomes; UP000018007; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR CDD; cd00165; S4; 1.
DR Gene3D; 3.30.1370.160; -; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 3.10.290.10; RNA-binding S4 domain; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR002942; S4_RNA-bd.
DR InterPro; IPR036986; S4_RNA-bd_sf.
DR InterPro; IPR040591; YlmH_RBD.
DR PANTHER; PTHR13633:SF3; MITOCHONDRIAL TRANSCRIPTION RESCUE FACTOR 1; 1.
DR PANTHER; PTHR13633; UNCHARACTERIZED; 1.
DR Pfam; PF01479; S4; 1.
DR Pfam; PF17774; YlmH_RBD; 1.
DR SMART; SM00363; S4; 1.
DR SUPFAM; SSF55174; Alpha-L RNA-binding motif; 1.
DR PROSITE; PS50889; S4; 1.
PE 4: Predicted;
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182}.
FT DOMAIN 183..244
FT /note="RNA-binding S4"
FT /evidence="ECO:0000259|SMART:SM00363"
SQ SEQUENCE 259 AA; 29836 MW; BB9F28BD216BC47E CRC64;
MQKEEQLLEK RLLELSRLAY HRDIITYSDF LNSNELHILH SLPKDSLYSQ YRVFGGYELA
ERQMAAFLPD ALSLRTENLQ ELFFPDEMCV LRIEPLHKKY AEELTHRDYL GAMLNLGIDR
SKTGDILVSG SGALVFVRPQ MKEFLREELT RIRHTTVLVT EEQPETFHYT PRFEEIRGTV
ASVRLDSLLS LAFGSSRNKL SGLIEGAKVF VNGKLVTSNG YQVHENDIIS VRGMGKFRFI
SELAVTKKKR ISVLIHKYI
//
