ID R6MJQ2_9BACE Unreviewed; 397 AA.
AC R6MJQ2;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 28.
DE SubName: Full=DNA-binding protein HU {ECO:0000313|EMBL:CDB96239.1};
GN ORFNames=BN659_01858 {ECO:0000313|EMBL:CDB96239.1};
OS Bacteroides sp. CAG:443.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
OC Bacteroides.
OX NCBI_TaxID=1262739 {ECO:0000313|EMBL:CDB96239.1, ECO:0000313|Proteomes:UP000018098};
RN [1] {ECO:0000313|EMBL:CDB96239.1, ECO:0000313|Proteomes:UP000018098}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:443 {ECO:0000313|Proteomes:UP000018098};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the bacterial histone-like protein family.
CC {ECO:0000256|RuleBase:RU003939}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CDB96239.1}.
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DR EMBL; CBEN010000012; CDB96239.1; -; Genomic_DNA.
DR AlphaFoldDB; R6MJQ2; -.
DR Proteomes; UP000018098; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0030527; F:structural constituent of chromatin; IEA:InterPro.
DR Gene3D; 4.10.520.10; IHF-like DNA-binding proteins; 1.
DR Gene3D; 3.10.350.10; LysM domain; 1.
DR InterPro; IPR000119; Hist_DNA-bd.
DR InterPro; IPR010992; IHF-like_DNA-bd_dom_sf.
DR InterPro; IPR018392; LysM_dom.
DR InterPro; IPR036779; LysM_dom_sf.
DR PANTHER; PTHR33175; DNA-BINDING PROTEIN HU; 1.
DR PANTHER; PTHR33175:SF2; INTEGRATION HOST FACTOR SUBUNIT ALPHA; 1.
DR Pfam; PF00216; Bac_DNA_binding; 1.
DR SMART; SM00411; BHL; 1.
DR SMART; SM00257; LysM; 1.
DR SUPFAM; SSF47729; IHF-like DNA-binding proteins; 1.
DR PROSITE; PS51782; LYSM; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000313|EMBL:CDB96239.1};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 224..246
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 337..386
FT /note="LysM"
FT /evidence="ECO:0000259|PROSITE:PS51782"
SQ SEQUENCE 397 AA; 44502 MW; BF9D9E0DC3A99AF3 CRC64;
MSDKFTQQDL ADLLAQRHEM EQADAEAFVK VLFSLIEESI VTDKYVKVKG LGTFKLIDVD
ARESVNVNTG ERIEIQGHSR ISFTPDTWMR ETVNKPFEHF ETVLLNEGTR FDDMDEVSSL
EEDIDTSEED LCEDVSSQEA DRNIDVDEKL EIKEDSEKPI PNEICDKDVA TGALEEEAVR
EAVEPVEEAV ASGHEATETI QKNVEPMPEG LESTLGRKFF RFPWCMIATV LLVGVVLGGI
IVWSVFSGRR YIPESVVRML MEREVSPLSK DTAVSSLALQ TDSVSSVKQA PEVARQDTVH
EVAASAKPET EEQVLPTAVK RETLADTVEY MIIGTRSTYT IKSGESLVRV ALKFYGNKKL
WPYLVQYNKD IIKNANVVPV GTTIRIPELA PKKVDRK
//
