ID R6UFU5_9FIRM Unreviewed; 1055 AA.
AC R6UFU5;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 48.
DE RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};
DE Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};
DE EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
GN Name=mfd {ECO:0000256|HAMAP-Rule:MF_00969};
GN ORFNames=BN503_01728 {ECO:0000313|EMBL:CDC69662.1};
OS Oscillibacter sp. CAG:155.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae;
OC Oscillibacter; environmental samples.
OX NCBI_TaxID=1262910 {ECO:0000313|EMBL:CDC69662.1, ECO:0000313|Proteomes:UP000017942};
RN [1] {ECO:0000313|EMBL:CDC69662.1, ECO:0000313|Proteomes:UP000017942}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:155 {ECO:0000313|Proteomes:UP000017942};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Couples transcription and DNA repair by recognizing RNA
CC polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent
CC release of RNAP and its truncated transcript from the DNA, and
CC recruitment of nucleotide excision repair machinery to the damaged
CC site. {ECO:0000256|HAMAP-Rule:MF_00969}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00969}.
CC -!- SIMILARITY: In the C-terminal section; belongs to the helicase family.
CC RecG subfamily. {ECO:0000256|HAMAP-Rule:MF_00969}.
CC -!- SIMILARITY: In the N-terminal section; belongs to the UvrB family.
CC {ECO:0000256|HAMAP-Rule:MF_00969}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CDC69662.1}.
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DR EMBL; CBFT010000127; CDC69662.1; -; Genomic_DNA.
DR AlphaFoldDB; R6UFU5; -.
DR Proteomes; UP000017942; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProtKB-UniRule.
DR GO; GO:0000716; P:transcription-coupled nucleotide-excision repair, DNA damage recognition; IEA:UniProtKB-UniRule.
DR CDD; cd17991; DEXHc_TRCF; 1.
DR Gene3D; 2.40.10.170; -; 1.
DR Gene3D; 3.40.50.11180; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 3.30.2060.10; Penicillin-binding protein 1b domain; 1.
DR Gene3D; 3.90.1150.50; Transcription-repair-coupling factor, D7 domain; 1.
DR HAMAP; MF_00969; TRCF; 1.
DR InterPro; IPR003711; CarD-like/TRCF_RID.
DR InterPro; IPR036101; CarD-like/TRCF_RID_sf.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR004576; Mfd.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047112; RecG/Mfd.
DR InterPro; IPR037235; TRCF-like_C_D7.
DR InterPro; IPR005118; TRCF_C.
DR InterPro; IPR041471; UvrB_inter.
DR NCBIfam; TIGR00580; mfd; 1.
DR PANTHER; PTHR47964; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR PANTHER; PTHR47964:SF1; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR Pfam; PF02559; CarD_TRCF_RID; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF03461; TRCF; 1.
DR Pfam; PF17757; UvrB_inter; 1.
DR SMART; SM01058; CarD_TRCF; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00982; TRCF; 1.
DR SUPFAM; SSF141259; CarD-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 4.
DR SUPFAM; SSF143517; TRCF domain-like; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|HAMAP-
KW Rule:MF_00969}; Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00969};
KW DNA damage {ECO:0000256|ARBA:ARBA00022763, ECO:0000256|HAMAP-
KW Rule:MF_00969};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204, ECO:0000256|HAMAP-
KW Rule:MF_00969};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|HAMAP-
KW Rule:MF_00969}; Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00969};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741, ECO:0000256|HAMAP-
KW Rule:MF_00969}; Reference proteome {ECO:0000313|Proteomes:UP000017942}.
FT DOMAIN 523..684
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 697..860
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
SQ SEQUENCE 1055 AA; 116026 MW; BC46E0B596066A14 CRC64;
MATADALCAR TLPPKLLHSL ALTLEVGSRA DLNELTDRLV SAGYTRCQQV EGVGQFALRG
GILDVFSPLM DQPVRCEFFD DEIDSMGTFD PGTQRRTKNV ASAQILPAAE VLPHCAPGGL
AGLAEQLETL AVKLAKKPKT EAAAQQLRQD AERFRTGAVP GGLDRYLAAV YPEICTGVDY
LPKDAVVFLC ESGRVDERVK GTLLQLKQDE ESLLTAGLLA GEYARLTLSG EELYAALEEF
PVVMEDTLPT SRHPLRPRGL MAVNAKQLSS YGGSLETAVS DLEHYRATGS AVLLLCAGET
RANNLRHLLE ERGIPAVLDL ANTAMPAPGE VRITLGALTA GSEWPQLHLA VLTEGQLTAT
SAGKRQRVKK TSNRQKIQSY TDLTPGDLVV HEHHGVGRFV GIQRLPVDGV EKDYIKIDYA
GGDCLYVPAT QLDLVSKYIG GGEDQERTRL NKLGGTEWAK QKTKAKKAAK DLAKGLIALY
AQRQKQPGFA FSPDSTWQRE FEESFDFTET DDQLRCIAEI KADMEKPRPM DRLLCGDVGY
GKTEVALRAV MKCILDGKQA AILVPTTVLA QQHYATAVSR FRNFPVKIEV LSRFTPAKEQ
KRILEAAAGG RVDLLIGTHK LLQKNMVFKD LGLLVIDEEQ RFGVTHKERL KEMSRQVDVL
TLSATPIPRT LNMALSGLRD MSTLEEPPRD RQPVQTYVLE HDWAILEDAM RRELARGGQI
YYLHNRVESI DLTASRIQKM LGPEVRIVVG HGKMSEHELS SVMQAMVDGE ADILVCTTII
ETGIDISNVN TLIIEDADKM GLAQLHQIRG RIGRSSRRAY AYLTYRRGKV LQETAAKRLA
AIREYVEFGS GFKIAMRDLE IRGAGNLLGP EQSGYLMSVG YDMYLKLLEE AVLEEKGEEK
KVETECSADL TINANIPERY VPAPEQRMDL YRRIAAIRTN DDASDLLDEM LDRYGEAPKS
VLALLDVALL RAAAAKAGVC DITQKGSMLR FTLAVFRPEA LVAVCGLSKY KFRLTLSAGE
TPMLTLKLKP GEDTLEAALA LVEDLKLASE PSGQA
//
