ID R7LR60_9CLOT Unreviewed; 608 AA.
AC R7LR60;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 41.
DE SubName: Full=RNA polymerase sigma factor {ECO:0000313|EMBL:CDE90223.1};
GN ORFNames=BN638_01245 {ECO:0000313|EMBL:CDE90223.1};
OS Clostridium sp. CAG:389.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC Clostridium.
OX NCBI_TaxID=1262801 {ECO:0000313|EMBL:CDE90223.1, ECO:0000313|Proteomes:UP000017978};
RN [1] {ECO:0000313|EMBL:CDE90223.1, ECO:0000313|Proteomes:UP000017978}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:389 {ECO:0000313|Proteomes:UP000017978};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CDE90223.1}.
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DR EMBL; CBJV010000025; CDE90223.1; -; Genomic_DNA.
DR AlphaFoldDB; R7LR60; -.
DR STRING; 1262801.BN638_01245; -.
DR Proteomes; UP000017978; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR PANTHER; PTHR43133:SF51; RNA POLYMERASE SIGMA FACTOR SIGV; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF08281; Sigma70_r4_2; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000017978};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 187..212
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 24..89
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 121..172
FT /note="RNA polymerase sigma factor 70 region 4 type 2"
FT /evidence="ECO:0000259|Pfam:PF08281"
SQ SEQUENCE 608 AA; 71644 MW; 1B24E25BFE12F108 CRC64;
MEKDLDKKLY NDYLNGEKEA FEILYNKYKN KIEYFIYNIV KDYQKAEDIA QETFIYVIQH
QMRENSSFKY YIYLVARSKA LNYINVEKRR NEITEKYLAN ADEKIEKDVL DIITAEENKK
ELLESIELLD ERYKNAIYLV NIEGLSYEET SKILGENLQS TKNLIHRGKK QLRKILLKKG
FDEMNKVLKI FVISICATVA LTGIVYATTV IYNKYIKNNT NHNITMNPSY QSTLDENTIN
NLWVGTLDLA WKELEDKIGL NKIELEGEMP QIANDLNEST FSKEMLNPND YKINVERTVT
NGYKIDATLN KELNFLESFD NFNDYKWTFG NSDEAIKYFG INNASPEKMN KNIEILFYNK
LNNGSLLSND MAIKLKTKEG DEIILYRTDD KKSFDEYYED IKAKTKNYKG RTEFSEDDEL
RIPYVKVNGM INYKQLYDRK IKNSKGLYIY DVIQNVNFYL NERGCNLSSK ATMVTEYMGI
GQDTKYCYFQ DTFIVFMKEA NSDKPYFALK VDNNDILEKV EETDEPKIFD STTLADGEKY
YSKYLQGGEY KFFEDEQYEY YYPSQKTKVV RVYFPNGVTM TAEDALKQGK ITMDLLDKYE
IEYSKREK
//