GenomeNet

Database: UniProt
Entry: R7LR60_9CLOT
LinkDB: R7LR60_9CLOT
Original site: R7LR60_9CLOT 
ID   R7LR60_9CLOT            Unreviewed;       608 AA.
AC   R7LR60;
DT   24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT   24-JUL-2013, sequence version 1.
DT   24-JAN-2024, entry version 41.
DE   SubName: Full=RNA polymerase sigma factor {ECO:0000313|EMBL:CDE90223.1};
GN   ORFNames=BN638_01245 {ECO:0000313|EMBL:CDE90223.1};
OS   Clostridium sp. CAG:389.
OC   Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC   Clostridium.
OX   NCBI_TaxID=1262801 {ECO:0000313|EMBL:CDE90223.1, ECO:0000313|Proteomes:UP000017978};
RN   [1] {ECO:0000313|EMBL:CDE90223.1, ECO:0000313|Proteomes:UP000017978}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=MGS:389 {ECO:0000313|Proteomes:UP000017978};
RA   Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA   Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA   Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA   Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA   Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA   Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA   Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA   Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA   Wang J., Brunak S., Ehrlich S.D.;
RT   "Dependencies among metagenomic species, viruses, plasmids and units of
RT   genetic variation.";
RL   Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|ARBA:ARBA00010641}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:CDE90223.1}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CBJV010000025; CDE90223.1; -; Genomic_DNA.
DR   AlphaFoldDB; R7LR60; -.
DR   STRING; 1262801.BN638_01245; -.
DR   Proteomes; UP000017978; Unassembled WGS sequence.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   CDD; cd06171; Sigma70_r4; 1.
DR   Gene3D; 1.10.1740.10; -; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR   InterPro; IPR039425; RNA_pol_sigma-70-like.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   NCBIfam; TIGR02937; sigma70-ECF; 1.
DR   PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR   PANTHER; PTHR43133:SF51; RNA POLYMERASE SIGMA FACTOR SIGV; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR   SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE   3: Inferred from homology;
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000017978};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        187..212
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          24..89
FT                   /note="RNA polymerase sigma-70 region 2"
FT                   /evidence="ECO:0000259|Pfam:PF04542"
FT   DOMAIN          121..172
FT                   /note="RNA polymerase sigma factor 70 region 4 type 2"
FT                   /evidence="ECO:0000259|Pfam:PF08281"
SQ   SEQUENCE   608 AA;  71644 MW;  1B24E25BFE12F108 CRC64;
     MEKDLDKKLY NDYLNGEKEA FEILYNKYKN KIEYFIYNIV KDYQKAEDIA QETFIYVIQH
     QMRENSSFKY YIYLVARSKA LNYINVEKRR NEITEKYLAN ADEKIEKDVL DIITAEENKK
     ELLESIELLD ERYKNAIYLV NIEGLSYEET SKILGENLQS TKNLIHRGKK QLRKILLKKG
     FDEMNKVLKI FVISICATVA LTGIVYATTV IYNKYIKNNT NHNITMNPSY QSTLDENTIN
     NLWVGTLDLA WKELEDKIGL NKIELEGEMP QIANDLNEST FSKEMLNPND YKINVERTVT
     NGYKIDATLN KELNFLESFD NFNDYKWTFG NSDEAIKYFG INNASPEKMN KNIEILFYNK
     LNNGSLLSND MAIKLKTKEG DEIILYRTDD KKSFDEYYED IKAKTKNYKG RTEFSEDDEL
     RIPYVKVNGM INYKQLYDRK IKNSKGLYIY DVIQNVNFYL NERGCNLSSK ATMVTEYMGI
     GQDTKYCYFQ DTFIVFMKEA NSDKPYFALK VDNNDILEKV EETDEPKIFD STTLADGEKY
     YSKYLQGGEY KFFEDEQYEY YYPSQKTKVV RVYFPNGVTM TAEDALKQGK ITMDLLDKYE
     IEYSKREK
//
DBGET integrated database retrieval system