ID R7QA04_CHOCR Unreviewed; 202 AA.
AC R7QA04;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE RecName: Full=Sigma 54 modulation/S30EA ribosomal protein C-terminal domain-containing protein {ECO:0000259|Pfam:PF16321};
GN ORFNames=CHC_T00003227001 {ECO:0000313|EMBL:CDF34884.1};
OS Chondrus crispus (Carrageen Irish moss) (Polymorpha crispa).
OC Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gigartinales;
OC Gigartinaceae; Chondrus.
OX NCBI_TaxID=2769 {ECO:0000313|EMBL:CDF34884.1, ECO:0000313|Proteomes:UP000012073};
RN [1] {ECO:0000313|Proteomes:UP000012073}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Stackhouse {ECO:0000313|Proteomes:UP000012073};
RX PubMed=23503846; DOI=10.1073/pnas.1221259110;
RA Collen J., Porcel B., Carre W., Ball S.G., Chaparro C., Tonon T.,
RA Barbeyron T., Michel G., Noel B., Valentin K., Elias M., Artiguenave F.,
RA Arun A., Aury J.M., Barbosa-Neto J.F., Bothwell J.H., Bouget F.Y.,
RA Brillet L., Cabello-Hurtado F., Capella-Gutierrez S., Charrier B.,
RA Cladiere L., Cock J.M., Coelho S.M., Colleoni C., Czjzek M., Da Silva C.,
RA Delage L., Denoeud F., Deschamps P., Dittami S.M., Gabaldon T.,
RA Gachon C.M., Groisillier A., Herve C., Jabbari K., Katinka M., Kloareg B.,
RA Kowalczyk N., Labadie K., Leblanc C., Lopez P.J., McLachlan D.H.,
RA Meslet-Cladiere L., Moustafa A., Nehr Z., Nyvall Collen P., Panaud O.,
RA Partensky F., Poulain J., Rensing S.A., Rousvoal S., Samson G.,
RA Symeonidi A., Weissenbach J., Zambounis A., Wincker P., Boyen C.;
RT "Genome structure and metabolic features in the red seaweed Chondrus
RT crispus shed light on evolution of the Archaeplastida.";
RL Proc. Natl. Acad. Sci. U.S.A. 110:5247-5252(2013).
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DR EMBL; HG001709; CDF34884.1; -; Genomic_DNA.
DR RefSeq; XP_005714703.1; XM_005714646.1.
DR AlphaFoldDB; R7QA04; -.
DR STRING; 2769.R7QA04; -.
DR EnsemblPlants; CDF34884; CDF34884; CHC_T00003227001.
DR GeneID; 17322418; -.
DR Gramene; CDF34884; CDF34884; CHC_T00003227001.
DR KEGG; ccp:CHC_T00003227001; -.
DR OMA; TVRMSWD; -.
DR OrthoDB; 1420at2759; -.
DR PhylomeDB; R7QA04; -.
DR Proteomes; UP000012073; Unassembled WGS sequence.
DR GO; GO:0044238; P:primary metabolic process; IEA:InterPro.
DR GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
DR CDD; cd00552; RaiA; 1.
DR Gene3D; 3.30.160.100; Ribosome hibernation promotion factor-like; 1.
DR Gene3D; 3.30.505.50; Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain; 1.
DR InterPro; IPR036567; RHF-like.
DR InterPro; IPR003489; RHF/RaiA.
DR InterPro; IPR032528; Ribosom_S30AE_C.
DR InterPro; IPR038416; Ribosom_S30AE_C_sf.
DR NCBIfam; TIGR00741; yfiA; 1.
DR PANTHER; PTHR33231; 30S RIBOSOMAL PROTEIN; 1.
DR PANTHER; PTHR33231:SF1; 30S RIBOSOMAL PROTEIN; 1.
DR Pfam; PF16321; Ribosom_S30AE_C; 1.
DR Pfam; PF02482; Ribosomal_S30AE; 1.
DR SUPFAM; SSF69754; Ribosome binding protein Y (YfiA homologue); 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000012073};
KW Translation regulation {ECO:0000256|ARBA:ARBA00022845}.
FT DOMAIN 149..188
FT /note="Sigma 54 modulation/S30EA ribosomal protein C-
FT terminal"
FT /evidence="ECO:0000259|Pfam:PF16321"
FT REGION 106..133
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 106..127
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 202 AA; 22904 MW; 9800760619060B8C CRC64;
MVLSAKETQE SAAVRITGNN ITLTDALRSY INEKLGKVMR RFAGVIAKMD VHLTVEHNPS
VPLRHKAEVV AFAGKTILRK EVRTDDMYAS IDALEERIAR TIRKYKERKE AKSKGKDSIS
RTADDAAEMD EGEADDQFQD IYQDTMPQIP AEAVLCCEYV DHPWYLFRNA ETKEISLVYK
RNHGGYGLIE PSNPQVVDEE QV
//
