ID RK1_ARATH Reviewed; 346 AA.
AC Q9LY66; Q9LWB4;
DT 05-SEP-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 24-JAN-2024, entry version 145.
DE RecName: Full=Large ribosomal subunit protein uL1c {ECO:0000303|PubMed:36423343};
DE AltName: Full=50S ribosomal protein L1, chloroplastic;
DE AltName: Full=CL1;
DE Flags: Precursor;
GN Name=RPL1; OrderedLocusNames=At3g63490; ORFNames=MAA21_120;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. C24;
RA Kavousi M., Subramanian A.R.;
RL Submitted (AUG-1995) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-129; THR-177 AND SER-197, AND
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=22092075; DOI=10.1021/pr200917t;
RA Aryal U.K., Krochko J.E., Ross A.R.;
RT "Identification of phosphoproteins in Arabidopsis thaliana leaves using
RT polyethylene glycol fractionation, immobilized metal-ion affinity
RT chromatography, two-dimensional gel electrophoresis and mass
RT spectrometry.";
RL J. Proteome Res. 11:425-437(2012).
RN [6]
RP NOMENCLATURE.
RX PubMed=36423343; DOI=10.1093/plcell/koac333;
RA Scarpin M.R., Busche M., Martinez R.E., Harper L.C., Reiser L.,
RA Szakonyi D., Merchante C., Lan T., Xiong W., Mo B., Tang G., Chen X.,
RA Bailey-Serres J., Browning K.S., Brunkard J.O.;
RT "An updated nomenclature for plant ribosomal protein genes.";
RL Plant Cell 35:640-643(2023).
CC -!- FUNCTION: This protein binds directly to 23S ribosomal RNA.
CC {ECO:0000250}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9LY66-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL1 family.
CC {ECO:0000305}.
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DR EMBL; X90855; CAA62364.1; -; Genomic_DNA.
DR EMBL; AL163818; CAB87802.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE80492.1; -; Genomic_DNA.
DR EMBL; BT001191; AAN65078.1; -; mRNA.
DR EMBL; AY133519; AAM91349.1; -; mRNA.
DR EMBL; AY059929; AAL24411.1; -; mRNA.
DR EMBL; AY053410; AAK96640.1; -; mRNA.
DR PIR; T49190; T49190.
DR PIR; T51934; T51934.
DR RefSeq; NP_191908.1; NM_116214.3. [Q9LY66-1]
DR AlphaFoldDB; Q9LY66; -.
DR SMR; Q9LY66; -.
DR BioGRID; 10838; 6.
DR STRING; 3702.Q9LY66; -.
DR iPTMnet; Q9LY66; -.
DR SwissPalm; Q9LY66; -.
DR PaxDb; 3702-AT3G63490-1; -.
DR ProteomicsDB; 234806; -. [Q9LY66-1]
DR EnsemblPlants; AT3G63490.1; AT3G63490.1; AT3G63490. [Q9LY66-1]
DR GeneID; 825524; -.
DR Gramene; AT3G63490.1; AT3G63490.1; AT3G63490. [Q9LY66-1]
DR KEGG; ath:AT3G63490; -.
DR Araport; AT3G63490; -.
DR TAIR; AT3G63490; EMB3126.
DR eggNOG; KOG1569; Eukaryota.
DR HOGENOM; CLU_065963_1_0_1; -.
DR InParanoid; Q9LY66; -.
DR OMA; DNLEFFH; -.
DR OrthoDB; 232170at2759; -.
DR PhylomeDB; Q9LY66; -.
DR PRO; PR:Q9LY66; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LY66; baseline and differential.
DR Genevisible; Q9LY66; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd00403; Ribosomal_L1; 1.
DR Gene3D; 3.30.190.20; -; 1.
DR Gene3D; 3.40.50.790; -; 1.
DR HAMAP; MF_01318_B; Ribosomal_uL1_B; 1.
DR InterPro; IPR005878; Ribosom_uL1_bac-type.
DR InterPro; IPR023674; Ribosomal_uL1-like.
DR InterPro; IPR028364; Ribosomal_uL1/biogenesis.
DR InterPro; IPR016095; Ribosomal_uL1_3-a/b-sand.
DR InterPro; IPR023673; Ribosomal_uL1_CS.
DR NCBIfam; TIGR01169; rplA_bact; 1.
DR PANTHER; PTHR36427:SF3; 39S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL; 1.
DR PANTHER; PTHR36427; 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL; 1.
DR Pfam; PF00687; Ribosomal_L1; 1.
DR SUPFAM; SSF56808; Ribosomal protein L1; 1.
DR PROSITE; PS01199; RIBOSOMAL_L1; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Chloroplast; Phosphoprotein; Plastid;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;
KW rRNA-binding; Transit peptide.
FT TRANSIT 1..70
FT /note="Chloroplast"
FT /evidence="ECO:0000305"
FT CHAIN 71..346
FT /note="Large ribosomal subunit protein uL1c"
FT /id="PRO_0000249342"
FT MOD_RES 129
FT /note="Phosphotyrosine"
FT /evidence="ECO:0007744|PubMed:22092075"
FT MOD_RES 177
FT /note="Phosphothreonine"
FT /evidence="ECO:0007744|PubMed:22092075"
FT MOD_RES 197
FT /note="Phosphoserine"
FT /evidence="ECO:0007744|PubMed:22092075"
FT CONFLICT 21
FT /note="S -> A (in Ref. 1; CAA62364)"
FT /evidence="ECO:0000305"
FT CONFLICT 43
FT /note="F -> V (in Ref. 1; CAA62364)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 346 AA; 37632 MW; 700C6C47288FE4AF CRC64;
MAACATHSSL MLAYAAASTR SQDLTPTPSL FSFASSRPNH LSFPLLLLGG SRDRRCAAID
RASNHKFIVS AVAAEADLDT EEDLEQTATA VLDPPKPKKG KAALVLKRDR TRSKRFLEIQ
KLRETKKEYD VNTAISLLKQ TANTRFVESV EAHFRLNIDP KYNDQQLRAT VSLPKGTGQT
VIVAVLAQGE KVDEAKSAGA DIVGSDDLIE QIKGGFMEFD KLIASPDMMV KVAGLGKILG
PRGLMPNPKA GTVTANIPQA IEEFKKGKVE FRADKTGIVH IPFGKVNFTE EDLLINFLAA
VKSVETNKPK GAKGVYWKSA HICSSMGPSI KLNIREMIDF KPPTAN
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