ID RKD2_ARATH Reviewed; 298 AA.
AC Q9CA66;
DT 30-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 24-JAN-2024, entry version 99.
DE RecName: Full=Protein RKD2;
DE Short=AtRKD2;
DE AltName: Full=RWP-RK domain-containing protein 2;
GN Name=RKD2; OrderedLocusNames=At1g74480; ORFNames=F1M20.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
RA Redman J.C., Wu H.C., Utterback T., Town C.D.;
RL Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15785851; DOI=10.1007/s00239-004-0144-2;
RA Schauser L., Wieloch W., Stougaard J.;
RT "Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus
RT japonicus.";
RL J. Mol. Evol. 60:229-237(2005).
CC -!- FUNCTION: Putative transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00852}.
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DR EMBL; AC011765; AAG52376.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE35598.1; -; Genomic_DNA.
DR EMBL; DQ056518; AAY78674.1; -; mRNA.
DR PIR; G96773; G96773.
DR RefSeq; NP_177588.1; NM_106108.1.
DR AlphaFoldDB; Q9CA66; -.
DR BioGRID; 29008; 3.
DR IntAct; Q9CA66; 3.
DR STRING; 3702.Q9CA66; -.
DR PaxDb; 3702-AT1G74480-1; -.
DR ProteomicsDB; 234715; -.
DR EnsemblPlants; AT1G74480.1; AT1G74480.1; AT1G74480.
DR GeneID; 843789; -.
DR Gramene; AT1G74480.1; AT1G74480.1; AT1G74480.
DR KEGG; ath:AT1G74480; -.
DR Araport; AT1G74480; -.
DR TAIR; AT1G74480; RKD2.
DR eggNOG; ENOG502QSPQ; Eukaryota.
DR HOGENOM; CLU_071153_0_0_1; -.
DR InParanoid; Q9CA66; -.
DR OMA; YPLFDWE; -.
DR OrthoDB; 70580at2759; -.
DR PhylomeDB; Q9CA66; -.
DR PRO; PR:Q9CA66; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9CA66; baseline and differential.
DR Genevisible; Q9CA66; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; TAS:TAIR.
DR InterPro; IPR044607; RKD-like.
DR InterPro; IPR003035; RWP-RK_dom.
DR PANTHER; PTHR46373:SF7; PROTEIN RKD2; 1.
DR PANTHER; PTHR46373; PROTEIN RKD4; 1.
DR Pfam; PF02042; RWP-RK; 1.
DR PROSITE; PS51519; RWP_RK; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..298
FT /note="Protein RKD2"
FT /id="PRO_0000401496"
FT DOMAIN 121..203
FT /note="RWP-RK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00852"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 73..112
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 241..279
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 188..222
FT /evidence="ECO:0000255"
FT COMPBIAS 7..22
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 85..112
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 253..269
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 298 AA; 33888 MW; 824BD83D626308DE CRC64;
MADHTTKEQK SFSFLAHSPS FDHSSLSYPL FDWEEDLLAL QENSGSQAFP FTTTSLPLPD
LEPLSEDVLN SYSSASWNET EQNRGDGASS EKKRENGTVK ETTKKRKINE RHREHSVRII
SDITTYTTSS APTTLSKETV SRYFYMPITQ AAIALNVGLT LLKRRCRELG IRRWPHRKLM
SLNTLISNVK ELQKMEGEEN AEKLQDALEM LEKEKRTIED LPDLEFKDKT KRLRQACFKA
NHKRKKKRSL KSDQSQVPSC SSSGSVPSDE SVDEAGMESD EEMKYLLCGF SSEFTSGL
//
