ID RKD5_ARATH Reviewed; 370 AA.
AC O81791;
DT 30-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 24-JAN-2024, entry version 116.
DE RecName: Full=Protein RKD5;
DE Short=AtRKD5;
DE AltName: Full=RWP-RK domain-containing protein 5;
GN Name=RKD5; OrderedLocusNames=At4g35590; ORFNames=F8D20.100;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15785851; DOI=10.1007/s00239-004-0144-2;
RA Schauser L., Wieloch W., Stougaard J.;
RT "Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus
RT japonicus.";
RL J. Mol. Evol. 60:229-237(2005).
CC -!- FUNCTION: Putative transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00852}.
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DR EMBL; AL031135; CAA20029.1; -; Genomic_DNA.
DR EMBL; AL161587; CAB80275.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE86537.1; -; Genomic_DNA.
DR PIR; T04664; T04664.
DR RefSeq; NP_195284.1; NM_119724.2.
DR AlphaFoldDB; O81791; -.
DR SMR; O81791; -.
DR STRING; 3702.O81791; -.
DR PaxDb; 3702-AT4G35590-1; -.
DR EnsemblPlants; AT4G35590.1; AT4G35590.1; AT4G35590.
DR GeneID; 829711; -.
DR Gramene; AT4G35590.1; AT4G35590.1; AT4G35590.
DR KEGG; ath:AT4G35590; -.
DR Araport; AT4G35590; -.
DR TAIR; AT4G35590; RKD5.
DR eggNOG; ENOG502QSPQ; Eukaryota.
DR HOGENOM; CLU_073979_0_0_1; -.
DR InParanoid; O81791; -.
DR OMA; GSYVEMQ; -.
DR OrthoDB; 70580at2759; -.
DR PhylomeDB; O81791; -.
DR PRO; PR:O81791; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O81791; baseline and differential.
DR Genevisible; O81791; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; TAS:TAIR.
DR InterPro; IPR044607; RKD-like.
DR InterPro; IPR003035; RWP-RK_dom.
DR PANTHER; PTHR46373; PROTEIN RKD4; 1.
DR PANTHER; PTHR46373:SF12; PROTEIN RKD5; 1.
DR Pfam; PF02042; RWP-RK; 1.
DR PROSITE; PS51519; RWP_RK; 1.
PE 3: Inferred from homology;
KW Coiled coil; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..370
FT /note="Protein RKD5"
FT /id="PRO_0000401499"
FT DOMAIN 224..309
FT /note="RWP-RK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00852"
FT REGION 193..232
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 347..370
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 283..328
FT /evidence="ECO:0000255"
FT COMPBIAS 198..229
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 370 AA; 43358 MW; 63165383987E2B15 CRC64;
MVDQGFFTLK KEKKKNILIK LFYVKILGFC FCDSWSSSDM AHSLTSLAVF QSVIRKEMVR
SLHVYESVEI EREFWFKSKS CYVEKKAKPL FRSEDFRRPE ISEGSVFGTW RCIFVFRFNH
SLPRFPTLLC LSRNPKLEDI PNLANELKFI SELKPSKIYE EEQCSSSTEG YYNSDLPKPR
KLVLKQDLNC LPDSETESEE SVNEKTEHSE FENDKTEQSE SDAKTEILKK KKRTPSRHVA
ELSLEELSKY FDLTIVEASR NLKVGLTVLK KKCREFGIPR WPHRKIKSLD CLIHDLQREA
EKQQEKNEAA AMAVAKKQEK LETEKRNIVK RPFMEIGIET KKFRQENFKK RHRASRAKKN
QESLVTSSST
//
