ID RM16_ARATH Reviewed; 179 AA.
AC Q95747; A0A2P2CLF1; A7KNJ7;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2023, sequence version 4.
DT 24-JAN-2024, entry version 131.
DE RecName: Full=Large ribosomal subunit protein uL16m {ECO:0000303|PubMed:36423343};
DE AltName: Full=60S ribosomal protein L16, mitochondrial;
GN Name=RPL16; OrderedLocusNames=AtMg00080;
OS Arabidopsis thaliana (Mouse-ear cress).
OG Mitochondrion.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. C24;
RX PubMed=8988169; DOI=10.1038/ng0197-57;
RA Unseld M., Marienfeld J.R., Brandt P., Brennicke A.;
RT "The mitochondrial genome of Arabidopsis thaliana contains 57 genes in
RT 366,924 nucleotides.";
RL Nat. Genet. 15:57-61(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND RNA EDITING.
RX PubMed=10611383; DOI=10.1073/pnas.96.26.15324;
RA Giege P., Brennicke A.;
RT "RNA editing in Arabidopsis mitochondria effects 441 C to U changes in
RT ORFs.";
RL Proc. Natl. Acad. Sci. U.S.A. 96:15324-15329(1999).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND RNA EDITING.
RC STRAIN=cv. Columbia;
RX PubMed=29519893; DOI=10.1105/tpc.18.00024;
RA Sloan D.B., Wu Z., Sharbrough J.;
RT "Correction of persistent errors in Arabidopsis reference mitochondrial
RT genomes.";
RL Plant Cell 30:525-527(2018).
RN [4]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 9-179.
RC STRAIN=cv. Landsberg erecta;
RX PubMed=8776901; DOI=10.1105/tpc.8.8.1377;
RA Sakamoto W., Kondo H., Murata M., Motoyoshi F.;
RT "Altered mitochondrial gene expression in a maternal distorted leaf mutant
RT of Arabidopsis induced by chloroplast mutator.";
RL Plant Cell 8:1377-1390(1996).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 20-173, AND RNA EDITING.
RC STRAIN=cv. Columbia, and cv. Landsberg erecta; TISSUE=Rosette leaf;
RX PubMed=17565941; DOI=10.1534/genetics.107.073585;
RA Bentolila S., Elliott L.E., Hanson M.R.;
RT "Genetic architecture of mitochondrial editing in Arabidopsis thaliana.";
RL Genetics 178:1693-1708(2008).
RN [6]
RP NOMENCLATURE.
RX PubMed=36423343; DOI=10.1093/plcell/koac333;
RA Scarpin M.R., Busche M., Martinez R.E., Harper L.C., Reiser L.,
RA Szakonyi D., Merchante C., Lan T., Xiong W., Mo B., Tang G., Chen X.,
RA Bailey-Serres J., Browning K.S., Brunkard J.O.;
RT "An updated nomenclature for plant ribosomal protein genes.";
RL Plant Cell 35:640-643(2023).
CC -!- SUBUNIT: Component of the mitochondrial ribosome large subunit.
CC {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000303|PubMed:36423343}.
CC -!- RNA EDITING: Modified_positions=12 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941, ECO:0000269|PubMed:29519893}, 70
CC {ECO:0000269|PubMed:10611383, ECO:0000269|PubMed:17565941,
CC ECO:0000269|PubMed:29519893}, 77 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 147 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941, ECO:0000269|PubMed:29519893}, 169
CC {ECO:0000269|PubMed:10611383, ECO:0000269|PubMed:17565941,
CC ECO:0000269|PubMed:29519893}, 171 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941, ECO:0000269|PubMed:29519893};
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL16 family.
CC {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; Y08501; CAA69754.3; ALT_SEQ; Genomic_DNA.
DR EMBL; BK010421; DAB41498.2; -; Genomic_DNA.
DR EMBL; D82062; BAA11531.1; ALT_SEQ; Genomic_DNA.
DR EMBL; EF488940; ABS50652.1; -; mRNA.
DR EMBL; EF488941; ABS50653.1; -; mRNA.
DR RefSeq; NP_085480.1; NC_001284.2.
DR PDB; 6XYW; EM; 3.86 A; Am=1-179.
DR PDBsum; 6XYW; -.
DR AlphaFoldDB; Q95747; -.
DR EMDB; EMD-10654; -.
DR SMR; Q95747; -.
DR IntAct; Q95747; 1.
DR STRING; 3702.Q95747; -.
DR PaxDb; 3702-ATMG00080-1; -.
DR PeptideAtlas; Q95747; -.
DR ProteomicsDB; 195535; -.
DR Araport; ATMG00080; -.
DR TAIR; ATMG00080; RPL16.
DR eggNOG; KOG3422; Eukaryota.
DR InParanoid; Q95747; -.
DR PRO; PR:Q95747; -.
DR Proteomes; UP000006548; Mitochondrion MT.
DR ExpressionAtlas; Q95747; baseline and differential.
DR GO; GO:0005762; C:mitochondrial large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0019843; F:rRNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0032543; P:mitochondrial translation; IBA:GO_Central.
DR CDD; cd01433; Ribosomal_L16_L10e; 1.
DR Gene3D; 3.90.1170.10; Ribosomal protein L10e/L16; 1.
DR InterPro; IPR047873; Ribosomal_uL16.
DR InterPro; IPR000114; Ribosomal_uL16_bact-type.
DR InterPro; IPR020798; Ribosomal_uL16_CS.
DR InterPro; IPR016180; Ribosomal_uL16_dom.
DR InterPro; IPR036920; Ribosomal_uL16_sf.
DR NCBIfam; TIGR01164; rplP_bact; 1.
DR PANTHER; PTHR12220; 50S/60S RIBOSOMAL PROTEIN L16; 1.
DR PANTHER; PTHR12220:SF24; 60S RIBOSOMAL PROTEIN L16, MITOCHONDRIAL; 1.
DR Pfam; PF00252; Ribosomal_L16; 1.
DR PRINTS; PR00060; RIBOSOMALL16.
DR SUPFAM; SSF54686; Ribosomal protein L16p/L10e; 1.
DR PROSITE; PS00586; RIBOSOMAL_L16_1; 1.
DR PROSITE; PS00701; RIBOSOMAL_L16_2; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Mitochondrion; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA editing.
FT CHAIN 1..179
FT /note="Large ribosomal subunit protein uL16m"
FT /id="PRO_0000062321"
SQ SEQUENCE 179 AA; 20147 MW; 484BE2EFD029F363 CRC64;
MYLTIKSIML LWKYLLVTES QVSKCGFHIV KKKGDVLYPK RTKYSKYRKG RCSRGCKPDG
TKLGFGRYGI KSCKAGRLSY RAIEAARRAI IGHFHRAMSG QFRRNGKIWV RVFADLPITG
KPTEVRMGRG KGNPTGWIAR VSTGQILFEM DGVSLANARQ AATLAAHKLC LSTKFVQWS
//
