ID RS242_ARATH Reviewed; 133 AA.
AC Q8LC83; Q94F06;
DT 03-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 2.
DT 27-MAR-2024, entry version 125.
DE RecName: Full=Small ribosomal subunit protein eS24y {ECO:0000303|PubMed:36423343};
DE AltName: Full=40S ribosomal protein S24-2;
GN Name=RPS24B; OrderedLocusNames=At5g28060; ORFNames=F15F15.130;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.127.2.398;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
RN [6]
RP NOMENCLATURE.
RX PubMed=36423343; DOI=10.1093/plcell/koac333;
RA Scarpin M.R., Busche M., Martinez R.E., Harper L.C., Reiser L.,
RA Szakonyi D., Merchante C., Lan T., Xiong W., Mo B., Tang G., Chen X.,
RA Bailey-Serres J., Browning K.S., Brunkard J.O.;
RT "An updated nomenclature for plant ribosomal protein genes.";
RL Plant Cell 35:640-643(2023).
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eS24 family.
CC {ECO:0000305}.
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DR EMBL; AC007627; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED93771.1; -; Genomic_DNA.
DR EMBL; AF386992; AAK62437.1; -; mRNA.
DR EMBL; AY072478; AAL66893.1; -; mRNA.
DR EMBL; AY086740; AAM63791.1; -; mRNA.
DR RefSeq; NP_198158.1; NM_122689.4.
DR AlphaFoldDB; Q8LC83; -.
DR SMR; Q8LC83; -.
DR BioGRID; 18152; 143.
DR IntAct; Q8LC83; 2.
DR STRING; 3702.Q8LC83; -.
DR PaxDb; 3702-AT5G28060-1; -.
DR ProteomicsDB; 226828; -.
DR EnsemblPlants; AT5G28060.1; AT5G28060.1; AT5G28060.
DR GeneID; 832878; -.
DR Gramene; AT5G28060.1; AT5G28060.1; AT5G28060.
DR KEGG; ath:AT5G28060; -.
DR Araport; AT5G28060; -.
DR TAIR; AT5G28060; RPS24B.
DR eggNOG; KOG3424; Eukaryota.
DR HOGENOM; CLU_107248_1_0_1; -.
DR InParanoid; Q8LC83; -.
DR OMA; PNAIFCF; -.
DR OrthoDB; 5479964at2759; -.
DR PhylomeDB; Q8LC83; -.
DR PRO; PR:Q8LC83; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8LC83; baseline and differential.
DR Genevisible; Q8LC83; AT.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0022627; C:cytosolic small ribosomal subunit; HDA:TAIR.
DR GO; GO:0009505; C:plant-type cell wall; HDA:TAIR.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0042788; C:polysomal ribosome; IDA:CAFA.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 3.30.70.3370; -; 1.
DR HAMAP; MF_00545; Ribosomal_eS24; 1.
DR InterPro; IPR001976; Ribosomal_eS24.
DR InterPro; IPR018098; Ribosomal_eS24_CS.
DR InterPro; IPR012678; Ribosomal_uL23/eL15/eS24_sf.
DR PANTHER; PTHR10496; 40S RIBOSOMAL PROTEIN S24; 1.
DR PANTHER; PTHR10496:SF0; 40S RIBOSOMAL PROTEIN S24; 1.
DR Pfam; PF01282; Ribosomal_S24e; 1.
DR SUPFAM; SSF54189; Ribosomal proteins S24e, L23 and L15e; 1.
DR PROSITE; PS00529; RIBOSOMAL_S24E; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..133
FT /note="Small ribosomal subunit protein eS24y"
FT /id="PRO_0000250533"
FT REGION 104..133
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 110..133
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 130
FT /note="T -> A (in Ref. 4; AAM63791)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 133 AA; 15419 MW; FC7D0C6CACD8AAA9 CRC64;
MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF
KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT KIEKSRKQIK ERKNRAKKIR
GVKKTKAGDT KKK
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